Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01132 ATGCCCATTGGGCCTGGGCTGGAGTGGGCAAGCCTCGTAAATATCACCATCGACATGGGTTTCCAACTTCCCTCCAATTCTACCTGTAATGCACTGCGATTCCGGGGCCCTACCATGGAGCCACCTACAATGTACGGACACTCCCAGCCCCTGAACATGCCCCCACAGATCTCTGCGGCCGAAAGCGACGACGGCTCTGGCGCCGACCCCACCCTCGACGCCCACCATCACCTTCACTACGACACGCACGCGCTCGAAGACGGTGCCGCCGGGGGCGTCGTCGTTGTCGAGGATGTCACCTCGGATGCGGTTTACGTCTCCGGTGGTGGAGGCCCCGAAGAGTCTAGCCAGCTTACGCTTTCGTTTCGTGGCCAAGTTTACGTCTTCGATGCCGTTACGCCTGATAAGGTTCAAGCCGTGTTGTTACTGTTGGGTGGATGTGAACTGTCTTCGAGTGGTTCGCCATGTGTGGATGCGGTGCCTCAACAGAATCAGAGGGGTTCCATGGAATATCCTGCAAGATGTAGTCTACCACAACGAGCTGCCTCGTTAGATAGGTTCAGGCAGAAAAGGAAAGAGCGATGCTTTGATAAAAAAGTGAGATATAGTGTACGGCAAGAAGTTGCGCTCAGGATGCATCGCAATAAGGGTCAATTCACTTCTTCTAAGAAACAAGATGGAGCTAATAGTTATGGTACAGACCAAGATTCAGGACAGGATGATAGTCAATCAGAAACCTCATGCACACATTGTGGGATTAGTTCAAAATCGACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGACTTTTTTGGGCAAATAGGGGTGCTTTGAGGGACCTTTCCAAGAGAAATCATGAACACTCTCTTGCACCGGTTGAGCAGGTTGATGAAGGTAACGACTCAGATTGTCGGACTGCCACCAATCCTGCGCATGACAATCATGGTGCATACTCAGAGCATGATAATCCAGCATTGGTTGCTGATCGTAAAGTTTTCCAGTCTCAGAAAATGCTGGAGTAG 1044 0.5163 MPIGPGLEWASLVNITIDMGFQLPSNSTCNALRFRGPTMEPPTMYGHSQPLNMPPQISAAESDDGSGADPTLDAHHHLHYDTHALEDGAAGGVVVVEDVTSDAVYVSGGGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSSGSPCVDAVPQQNQRGSMEYPARCSLPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGANSYGTDQDSGQDDSQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNHEHSLAPVEQVDEGNDSDCRTATNPAHDNHGAYSEHDNPALVADRKVFQSQKMLE 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01132 347 ProSiteProfiles GATA-type zinc finger domain profile. 242 291 IPR000679 GO:0006355|GO:0043565
Spst8g01132 347 MobiDBLite consensus disorder prediction 221 261 - -
Spst8g01132 347 PANTHER GATA TRANSCRIPTION FACTOR 28 49 317 IPR045280 GO:0006355
Spst8g01132 347 Pfam tify domain 112 145 IPR010399 -
Spst8g01132 347 ProSitePatterns GATA-type zinc finger domain. 248 275 IPR000679 GO:0006355|GO:0043565
Spst8g01132 347 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 244 296 - -
Spst8g01132 347 Pfam GATA zinc finger 248 283 IPR000679 GO:0006355|GO:0043565
Spst8g01132 347 MobiDBLite consensus disorder prediction 213 266 - -
Spst8g01132 347 ProSiteProfiles Tify domain profile. 111 146 IPR010399 -
Spst8g01132 347 MobiDBLite consensus disorder prediction 38 74 - -
Spst8g01132 347 ProSiteProfiles CCT domain profile. 180 222 IPR010402 GO:0005515
Spst8g01132 347 Pfam CCT motif 180 222 IPR010402 GO:0005515
Spst8g01132 347 Gene3D - 238 297 IPR013088 GO:0006355|GO:0008270
Spst8g01132 347 CDD ZnF_GATA 247 292 IPR000679 GO:0006355|GO:0043565
Spst8g01132 347 SMART tify_2 111 146 IPR010399 -
Spst8g01132 347 SMART GATA_3 242 295 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01132 Spst-Chr8 10001363 10005451 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01132 112 336 Tify Gene Family AT4G24470 59.414 2.29e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst8g01132 CCT 2.8e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01132 - - pvu:PHAVU_008G182900g 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01132 8 10001363 10005451 Spst8g01132 8 10001363 10005451 ECH
Spst8g01132 8 10001363 10005451 Spst9g01112 9 10146006 10148943 PCT