Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01112 ATGGAATATGGTGGGTTTGGGAGCTTGTGGGAGTGTGGTTCAGTCTCAGAAGAAGACTTGATCGAGGAGCTGCTGGTAGAAGGTTGCTGGGTGGAAACGAGTGGCGTTGGGAGCTGCGAGGGTCAGTACATGGGAAGTTCAGAAGTGGAGGCGGAGGTGGAAGTGGGGAAGAGATGGTGGATTGGACCCAAGGGTAATTCCTCCGTCAAAGAGAGATTAGTGGTTGCAGTGGAGTATCTAAGAGAATACACAAAGAACACGAATGCGCTGATTCAGATATGGGTTCCCTTGCGGAGAGGCCTTGGGCCGGAGTACCTTAACAGAAATCCAGACGAGTGGAACAAGACAAGGGACGTAAACCTTCGGTTCTTTAGAAGCCATGAGTACCCGCGGCTTCCTTATTATGTGGACGTCCCTGGTTCTTTAGCCCTTCCTGTCTTGGAAAGAGGCACTGCCACATGCCTCGGTGTAATCCAGATTGTGATGCCTCCCTGCGACACCATCAACCATTCCCCACAACTTGTTACCAATAATATTCTCTGCAATTCTTTCCAGGATTTGCAGGCAGATGATTTTAGAAGTTGTGAGAACGAGCTGGTTCAACCGAGTGTAAAGGTATTTGAGGAGGTGTACGAAGCAGCAGTGAATGAGATGGTGGAGGTGTTGAGGTGCGTGTGCAGGGCGCAGAAGGTGGCATTGGCTCTCACATGGGCTCCGTGTTGCATCCAAGAAGCAGGAAAGTGTGGGTACGGCCATTCGACGGAGAATTACTTGTCGACAGTGGACAGAGCGTGTTTTGTGGGGGACGCCCAAATGCTGCCGTTCAAGGAGGCCTGCTCTCAGCATCACCTTTTGCGGGGGCAGGGAATCGTTGGCACAGCCTTCACAACATCCAAGCCCTGTTTTGCGATCGACATAACCGCCTTCACCAAAACCCAATATCCCCTCGCCCAACACGCCAACATCTTCGGCTTGCATGCTGCCGTCGCCATTCCTCTAAGGACCCTCTACACCGATTTTGTCCTCGAGTTCTTCCTTCCTAAGGACTGCCGTGACAGGGAACACCAAAACCACTTCCTCAACTCCATATCCCTGCTCCTTCAGCAAGCTTGCCGGACCTTGCACGTCGTGACGGAGGATGAGTTCACGTTGCCTCCACCACCACCACCACCACCGCAGCCTTTCATGAGTAACAAAGAGGAAATAGTTATGAGTCAGAAATCAGAATCCCAGTCGCAGGTAGAAGCGTGTGGGTCGTGGATTGCACATATGATGGAGGCGCAGGCGCAGGCCCAGGAAGAAAAGGGGAAAGGAGTGTGCGTGACGTTGGAATACCTGGAAGAGGCGAAAGAGGAGTTCAAAGTGACAAGGAAGTTGAAGTGGGAGAATGGGAGTTGCAGTAATTACGAGGCAGTAGATGTGGGAGGGGATGAATCTGAAACTCAGACGTTTGGTGGTCGACGCGGGAGAAGGTCAGGGGAGAAGAGACGGACGAAGGCGGAGAAGAGTATCAGCTTGCCTGTTCTCAGACAGTACTTTGCCGGAAGCCTTAAGGATGCCGCAAAGAGCATCGGAGTGTGTCCGACAACTCTGAAAAGGATATGCAGACAGCACGGCATCACGAGGTGGCCTTCGAGGAAAATAAAGAAGGTGGGGCACTCTTTGAAGAAGCTTCAGCTTGTCATCGATTCGGTCCAGGGTGCCGAGGGTGCCATCCAGATCGGTTCCTTCTACAACAGTTTTCCGGAGTTGAGCTCCGCCACTTCTCAGTCTTCCAAGAGCAAGAACATTAGCAGCAGCAACAACAACACCACCACCACCATCAACTCCTTGGATGCATCCTCCTCTCCTTCCACCGTGGTTCCTCTACAGCAGCAGTATTTATGTTGTAACAGTGCACCTCTGAGGGTGAAGGCTACTTTTGGGGATGAAAAGATCCGTTTCAGCCTGCAAGAAAAGTGGGGGTTCAGAGATTTGAAGGTTGAGATTGGAAGGCGTTTCAACGTAAAGGATGTGGGGAAGGTGGTTGTGAAGTATTTGGATGACGAAGGAGAGTGGGTTGTTTTAGCGTGCGATGGTGATCTTGAGGAGTGTAAAGACTTGCACACAACCTATGAGAGCCACACTATTAGACTCGCCCTATTTCAACTCTCCCCTTCCCCTTCTCCTTAA 2172 0.5143 MEYGGFGSLWECGSVSEEDLIEELLVEGCWVETSGVGSCEGQYMGSSEVEAEVEVGKRWWIGPKGNSSVKERLVVAVEYLREYTKNTNALIQIWVPLRRGLGPEYLNRNPDEWNKTRDVNLRFFRSHEYPRLPYYVDVPGSLALPVLERGTATCLGVIQIVMPPCDTINHSPQLVTNNILCNSFQDLQADDFRSCENELVQPSVKVFEEVYEAAVNEMVEVLRCVCRAQKVALALTWAPCCIQEAGKCGYGHSTENYLSTVDRACFVGDAQMLPFKEACSQHHLLRGQGIVGTAFTTSKPCFAIDITAFTKTQYPLAQHANIFGLHAAVAIPLRTLYTDFVLEFFLPKDCRDREHQNHFLNSISLLLQQACRTLHVVTEDEFTLPPPPPPPPQPFMSNKEEIVMSQKSESQSQVEACGSWIAHMMEAQAQAQEEKGKGVCVTLEYLEEAKEEFKVTRKLKWENGSCSNYEAVDVGGDESETQTFGGRRGRRSGEKRRTKAEKSISLPVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKVGHSLKKLQLVIDSVQGAEGAIQIGSFYNSFPELSSATSQSSKSKNISSSNNNTTTTINSLDASSSPSTVVPLQQQYLCCNSAPLRVKATFGDEKIRFSLQEKWGFRDLKVEIGRRFNVKDVGKVVVKYLDDEGEWVVLACDGDLEECKDLHTTYESHTIRLALFQLSPSPSP 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01112 723 PANTHER PROTEIN NLP8 54 714 IPR045012 GO:0003700
Spst8g01112 723 CDD PB1_NLP 635 716 IPR034891 -
Spst8g01112 723 ProSiteProfiles PB1 domain profile. 634 717 IPR000270 GO:0005515
Spst8g01112 723 Gene3D - 631 720 - -
Spst8g01112 723 Pfam RWP-RK domain 504 551 IPR003035 -
Spst8g01112 723 ProSiteProfiles RWP-RK domain profile. 490 571 IPR003035 -
Spst8g01112 723 MobiDBLite consensus disorder prediction 477 500 - -
Spst8g01112 723 SUPERFAMILY CAD & PB1 domains 631 720 - -
Spst8g01112 723 SMART PB1_new 634 717 IPR000270 GO:0005515
Spst8g01112 723 Pfam PB1 domain 635 716 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01112 Spst-Chr8 9591629 9594274 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01112 19 718 NLP Transcription Factor Family AT2G17150 38.739 1.93e-164 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Spst8g01112 PB1 1.1e-12 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01112 - - var:108322742 1073.15