Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01111 ATGAAGGAGGAATCTGATCGCGGTGAAGAAGCCACTTCTTCTTCCTGTGTGGGGAAGAAGCGGAGCAGATCAATAGCGTCAATGGATGAGGAAGGGTGGAAGGGGAAGAGATCCTCCGAGCCACGTCCGTGCACGGAGTGCGGCAAGAAGTTCTGGTCTTGGAAGGCACTCTTCGGCCACATGCGATGCCACCCTGAGCGTCAGTGGAGAGGGATCAACCCTCCCCCCAACGTAAGAAGACAGCAACAGCAACAGCAGCAACAACATCAACAGATGACCATGATAATGACCCAAGAAGACCACGAGGTCGCTGCCTGTTTGCTTCTGCTTGCCAATTCCAACAAAGAGAGGGACAAAGAGAAAGAGGAAGATGTTCATCAGTGGCAGTTCGAATGCTCGAGTTGCAGCAGGGTGTTCGGATCGCACCAGGCTCTTGGAGGGCACCGTGCGAGTCACAAGAACGTGAAGGGGTGTTTTGCCAACACAAGTAATGTAGGCGTAGGCTTAGGCATAGGAAGCAGCAGCAACAACAAGTGCGATGAGGAGAACATGAGTGGTGACGGGCACAGGTGCAGCATATGCCTTAGGGTATTCTCCACAGGGCAGGCACTGGGCGGGCACAAGAGGTGTCATTGGGAGAATCAGAAAGGGGACAACCTCCTCCTTCTTGACTCACCACCTAAGTCCTCCGTCCACTTGAATTCCCCTCCCCCCATCCCCTCTCCTCCCCTCACTCTCGATTTGAGGTTGCGACTCTAG 759 0.5415 MKEESDRGEEATSSSCVGKKRSRSIASMDEEGWKGKRSSEPRPCTECGKKFWSWKALFGHMRCHPERQWRGINPPPNVRRQQQQQQQQHQQMTMIMTQEDHEVAACLLLLANSNKERDKEKEEDVHQWQFECSSCSRVFGSHQALGGHRASHKNVKGCFANTSNVGVGLGIGSSSNNKCDEENMSGDGHRCSICLRVFSTGQALGGHKRCHWENQKGDNLLLLDSPPKSSVHLNSPPPIPSPPLTLDLRLRL 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01111 252 Gene3D Classic Zinc Finger 19 105 - -
Spst8g01111 252 ProSitePatterns Zinc finger C2H2 type domain signature. 191 211 IPR013087 -
Spst8g01111 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 130 157 IPR013087 -
Spst8g01111 252 SUPERFAMILY beta-beta-alpha zinc fingers 41 152 IPR036236 -
Spst8g01111 252 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Spst8g01111 252 SMART c2h2final6 42 64 IPR013087 -
Spst8g01111 252 SMART c2h2final6 189 211 IPR013087 -
Spst8g01111 252 SMART c2h2final6 130 152 IPR013087 -
Spst8g01111 252 Gene3D Classic Zinc Finger 127 211 - -
Spst8g01111 252 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 19 250 - -
Spst8g01111 252 MobiDBLite consensus disorder prediction 1 44 - -
Spst8g01111 252 ProSitePatterns Zinc finger C2H2 type domain signature. 132 152 IPR013087 -
Spst8g01111 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 189 216 IPR013087 -
Spst8g01111 252 MobiDBLite consensus disorder prediction 223 246 - -
Spst8g01111 252 MobiDBLite consensus disorder prediction 23 44 - -
Spst8g01111 252 MobiDBLite consensus disorder prediction 67 93 - -
Spst8g01111 252 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
Spst8g01111 252 MobiDBLite consensus disorder prediction 1 16 - -
Spst8g01111 252 MobiDBLite consensus disorder prediction 75 93 - -
Spst8g01111 252 Pfam C2H2-type zinc finger 43 66 - -
Spst8g01111 252 Pfam C2H2-type zinc finger 189 213 - -
Spst8g01111 252 Pfam C2H2-type zinc finger 130 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01111 Spst-Chr8 9581771 9582529 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01111 42 252 C2H2 Transcription Factor Family AT4G35280 50.450 3.33e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst8g01111 zf-C2H2_6 7.9e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01111 - - vun:114195192 382.104