Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01102 ATGGAAAATAGAGGTGACGGTGCTGATGCTGAGCTTCAACTTGATGCTGATTTTGGGCCAGATCCTGCCCAGACATGTGCTGGAAATGAAAAGGGTGACAAGGCCTCCAAGATTCCAAGGTGCAGACGACCTAATCTATCCTCACTGCAAATACCAGCATGGTCACTAGATATTGCATTATCTACTTTTGCAAAGACCGATAGTCCTTCAGTTTCACGATCAAGTCCTGGTTCCACTAGAGGACTTCCTCCAAGGCCAAATTCAGCCAAATTCAGATCTTCAATGAGAACTTTACTTCCTCAGAGGAGCTTAAAGACAAATACTTGTTCCCCGGATATTGAACGGACAGGTCTCATAGTTCCTAAAACTCCCTTATCAGATGCTCCTTTGGATAAACCTTCCACTTCAATCCATCTGTCTCTTAAAAATAAGGTCATCTCCCAATCAACAAAAGGTGCACATTCATTACCAGTTACTCCATTTGCAACTTCGGCTTCAGAGAATGGACATGGAAGACATCTTGGGTGTGATTCTAGTTCAAGTAAAATGAGTGTTCGTCGGATTATGACTCGATCATTTTCTGTCCCAGCTAATGGCAAAAGCACTAGTTTAAAGGTTACAGATTCCAGGGGCTTGATTCGTGTAATATCGGCAAAACCGCATCTTCAAACTGTTGGTAGATACCGAACTGATGGATCTTTGGTTCCAGAGATTGCCATTGAAGATGCCCCCGAGGATATTCCAGAGGAACAAGCAGTTTGTAGGATTTGTTTGGTGGAGCTTGGGGAAGGAGGGAGTACACTTAAGATGGAATGCAGTTGTAGAGGTGATCTTGCACTTGCTCACCGAGAATGTGCAGTGAAGTGGTTTAGTATAAAGGGAAACAGGACATGTGATGTTTGCAAGCAGGATGTCCAAAACCTCCCAGTAACACTGTTGAAAATTTATAATCGTCAAACTATTTTTAGGCAGACGTCAAATGTGCCAAACCAGACAGAAGTAGTTTATTACAGGATCTGGCAGGATGTACCAGTACTTATCTTGGTCAGCATGCTTGCTTACTTTTGTTTTCTAGAGCAACTAATGGTTTCAGATTTGGGCCCTCGTGCTCTTGCCATTTCAGTACCTTTCTCCTGTGTTTTAGGTTTCCTTTCTTCTATGATTGCGTCAACTATGGTGAGCAGGAGTTTCGTTTGGGCTTATGCCTGCTTCCAGTTTGCAATTCTTATCCTCTTAGCTCATGTATTTTATACTATTCTGAATTTGAATGCCGTTCTCTCGATTCTCCTTTCCTCATTCATTGGGTTTGGGATTGCAATCACTGTGAATTCTCTGATTATGGAATTTATTGGATGGAGAAATAGGAGGATTCAATCTTCCATTGAGAATGCTAACATGACAGAGCAGCAGCGTCGCGAACATATTCTTTGGAATGCAACTACTATCAAATCTTGCACTTATTGTGGTTACTCCAGTCATAGTGAGAATTCTTGCAATCGTAAACATGAATTTCCCATAAATGGTGATGTCAAATATGTTGTGAATGTGGGGGGCCTCTACGAAATGACTTGGACTAACAAGACAAAATGCTTGAACCATCATGTGCTTGCTTTGAAGATTATGGAGGTACGTATGGACGAAAAAAGGAATGGGACGTTGAACATACACAATAAACTTGCAGCTATTCTTCATAATGGACGCCACTGCATTTTTGACTCAACAGAACTTCAGGCCAGAGTGATAATATGGTTGGCAAGTAGAGAAATGGTGGAAAGCAGAAGCTTGCATTCTGAAGCATTATTAGTACATATTTCGCGAGGCCTCTCCATAAAGAAATCACTTGAGAATTTTCTGCAGAGGAGAAGGAAAAGGAAAAGGTCTCAAAGACACAATGAGAAAAATTAG 1905 0.4152 MENRGDGADAELQLDADFGPDPAQTCAGNEKGDKASKIPRCRRPNLSSLQIPAWSLDIALSTFAKTDSPSVSRSSPGSTRGLPPRPNSAKFRSSMRTLLPQRSLKTNTCSPDIERTGLIVPKTPLSDAPLDKPSTSIHLSLKNKVISQSTKGAHSLPVTPFATSASENGHGRHLGCDSSSSKMSVRRIMTRSFSVPANGKSTSLKVTDSRGLIRVISAKPHLQTVGRYRTDGSLVPEIAIEDAPEDIPEEQAVCRICLVELGEGGSTLKMECSCRGDLALAHRECAVKWFSIKGNRTCDVCKQDVQNLPVTLLKIYNRQTIFRQTSNVPNQTEVVYYRIWQDVPVLILVSMLAYFCFLEQLMVSDLGPRALAISVPFSCVLGFLSSMIASTMVSRSFVWAYACFQFAILILLAHVFYTILNLNAVLSILLSSFIGFGIAITVNSLIMEFIGWRNRRIQSSIENANMTEQQRREHILWNATTIKSCTYCGYSSHSENSCNRKHEFPINGDVKYVVNVGGLYEMTWTNKTKCLNHHVLALKIMEVRMDEKRNGTLNIHNKLAAILHNGRHCIFDSTELQARVIIWLASREMVESRSLHSEALLVHISRGLSIKKSLENFLQRRRKRKRSQRHNEKN 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01102 634 PANTHER OS02G0165000 PROTEIN 37 469 - -
Spst8g01102 634 Pfam RING-variant domain 254 301 IPR011016 GO:0008270
Spst8g01102 634 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 309 IPR013083 -
Spst8g01102 634 SMART ringv_2 253 302 IPR011016 GO:0008270
Spst8g01102 634 MobiDBLite consensus disorder prediction 1 43 - -
Spst8g01102 634 ProSiteProfiles Zinc finger RING-CH-type profile. 246 308 IPR011016 GO:0008270
Spst8g01102 634 CDD RING_CH-C4HC3_MARCH 254 302 - -
Spst8g01102 634 SUPERFAMILY RING/U-box 250 305 - -
Spst8g01102 634 MobiDBLite consensus disorder prediction 65 92 - -
Spst8g01102 634 MobiDBLite consensus disorder prediction 65 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01102 Spst-Chr8 9502524 9515553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01102 240 308 C3H Transcription Factor Family AT2G37950 44.444 1.98e-14 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01102 - - gmx:100789461 776.933