Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01100 ATGAACAATGGACGTGGCATAGCTTGGATTTTCCTCTTTCTGCTGCTGCTGCTTCTTCCATGTTTGGTTGTTGGTGGTGGTGGTGATGGTGAGTGTAAATGTAAAAACGATAAGGAGGAAGCTGGACAAAAGGTTGGAGTAAAAGAGAAGGTTTTGGCTAAGAATTACAAAATAGGAGCTCTGGTTTCGATTTTGTTTGCAAGTGCAATAGGTGTTACTCTTCCAATGCTCACAAAAACTTTCCCTGCCTTGCATCCTGAGAAGGAGTTGTTCTTCATCGTGAAAGCCTTTGCGGCTGGGATTATATTGTCCACTGGTTTCATTCATGTGTTGCCCGATGCTTTTGAGAAGTTGACATCTCCGAGTCTCGCTGATCCCTGGGATTTTCCCTTCGCGGGATTTGTGGCAATGTTAGCGGCCATTGGAACGCTCATGGTTGATTCTCTTGCCACTGCATATTTCAAAAAGTCTACCCTAATTAGCAACAACAAGGATCCACCTGTTGACGAAGAAGATCATCATGATCAGCATCAGCAGGTACCTTCCCATGCAACTCATCAAGACCATGCTCATGCTTCCCTTCCTTCTCCTTCAACGGATCTCCTTCGCCATCGTGTTATTTCTCAGGTGTTGGAGTTGGGGATTGTGGTGCATTCTGTGATAATAGGGATCTCTCTGGGTGTGTCTGAAAGCCCTAAAAGAATAAGGCCTCTCATTGCTGCTTTAACTTTTCACCAATTTTTTGAAGGCATGGGGCTCGGTGGTTGCATCTCGCAGGCAAAATTCAAGAGCAAAGCAGTTACAATAATGGCATTGTTTTTTTCATTGACAACACCAGTGGGAATTGCAATTGGTATGATAATCAGTGATTACTACAATGAGAACAGTGGAAAGGCTCTGATTTTGGAAGGTGTTCTTAACGCAGCATCTGCAGGGATCTTAATTTACATGTCACTTGTGGACCTCCTTGCGCCGGATTTAATGCATCCCAGGATCCAAGCAAGTAGTAGGCTTCAGATGGGCGTTCACGCGTCTTTGCTTTTTGGGGCTGCCTGCATTCGTCAAGGGAAGGTCAGGCTCACAAAATGGTATTCTCCTTACTCGCAGAAGGAAAGAAATAAGGCTATCCGTGAGCTCAGTGGCGTGGTTCTTACTCGTGCTCCCAAGCTCTGTAATTTTGTAGAATGGCGGGGACATAAAGTTGTTTACAAAAGGTATGCTAGTCTTTATTTCTGCATGTGTATTGATGAGGATGACAACGAACTAGAAGTCCTTGAAATCATTCATCATTTTGTGGAGATTCTTGATCGTAATTTCTGTTCTGACGATGAGTCAAGCAAGAAAACTGTTGCCCGGTTAATAGCTGCACAGGATTCATTGGTAGAAACTGCTAAGGAGGAAGCCAGTTCATTAAGTAATATAATTGCCCAAGCCACGAAGATTGTGGTCGTGACCCACCATTCTATTACTGGTAATCACTCTGCTTAG 1488 0.4402 MNNGRGIAWIFLFLLLLLLPCLVVGGGGDGECKCKNDKEEAGQKVGVKEKVLAKNYKIGALVSILFASAIGVTLPMLTKTFPALHPEKELFFIVKAFAAGIILSTGFIHVLPDAFEKLTSPSLADPWDFPFAGFVAMLAAIGTLMVDSLATAYFKKSTLISNNKDPPVDEEDHHDQHQQVPSHATHQDHAHASLPSPSTDLLRHRVISQVLELGIVVHSVIIGISLGVSESPKRIRPLIAALTFHQFFEGMGLGGCISQAKFKSKAVTIMALFFSLTTPVGIAIGMIISDYYNENSGKALILEGVLNAASAGILIYMSLVDLLAPDLMHPRIQASSRLQMGVHASLLFGAACIRQGKVRLTKWYSPYSQKERNKAIRELSGVVLTRAPKLCNFVEWRGHKVVYKRYASLYFCMCIDEDDNELEVLEIIHHFVEILDRNFCSDDESSKKTVARLIAAQDSLVETAKEEASSLSNIIAQATKIVVVTHHSITGNHSA 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01100 495 Gene3D - 350 478 - -
Spst8g01100 495 NCBIfam ZIP zinc/iron transport family 46 353 IPR004698 GO:0005385|GO:0016020|GO:0071577
Spst8g01100 495 SUPERFAMILY SNARE-like 354 444 IPR011012 -
Spst8g01100 495 Pfam ZIP Zinc transporter 56 352 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Spst8g01100 495 ProSitePatterns Clathrin adaptor complexes small chain signature. 401 411 IPR000804 GO:0006886|GO:0016192|GO:0030117
Spst8g01100 495 MobiDBLite consensus disorder prediction 164 197 - -
Spst8g01100 495 MobiDBLite consensus disorder prediction 165 184 - -
Spst8g01100 495 Pfam Clathrin adaptor complex small chain 354 440 IPR022775 -
Spst8g01100 495 PANTHER ZINC/IRON TRANSPORTER 55 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01100 Spst-Chr8 9481736 9487553 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01100 32 351 Inorganic Solute Cotransporters AT3G12750 52.294 1.51e-111 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01100 K14709 - qsa:O6P43_020675 402.134