Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01097 ATGGAGGAGATGCAACAACTCCTCAGCATGGGCTTCCCCGATGAGTTAGCCGCCCAAGCCTTGGCCGCCACCGGTGGTAAATCCACGGTCAAAGCCACCGAATGGATTCTCACTCACAAATCCAACGCCGCCAATCCTTCCACTTTCTCGTCCACATTCCAGCCCAAGCTCGATCGTTTCTTCCATTCCTCCCAATCGCCCACACCTCCGCAATCGCAATCACAAGAAGAAGACCAACATTCCAAACGCCCCAAGATTTCTAATCATTCCGCAGAACATCCACCACCACAACAAAACTGGCCTACTTTCTTCTTCAAGACCGCAGACAAGAAACACGCCAACACTCACATTCACCAACCCTTGTACGAGCGCTTGCGTCCCAGAACCCTCGACGACGTCGTAGGTCAGGACCATCTCCTGGCCCCCAACTCCCTTCTTCGCTCTGCAATCCAACGCAACCGCCTCCCCTCCACCCTCTTGTGGGGTCCACCTGGTACTGGTAAGACCACTATAGCAAAAGCCATTGTTAAATCCTCAACCTCGACGTGTTACCGCTTTGTCTCCTTATCTGCCGTCACTAGCGGCGTTAAAGACGTCAGGGACGCCGTTGACGAGGCCAGAAAACTCAGACTTAAATCCAACCAAACCACCGTTCTCTTCGTTGACGAGGTTCACAGGTTCAACAAGTCCCAACAGGACTCTTTCTTACCCGTCATTGAAGATGGCAGCATTGTCTTCGTAGGGGCCACCACTGAGAACCCTTCTTTCCATTTGATCACACCTCTCTTGTCTCGCTGCCGTGTCCTCACACTTAACCCTCTCCAACCCCACCACCTTGCCTTGCTTCTAAACCGCGCTGTCAATGATACTGACAAAGGGTTGATGCAAAGCGTGGGGGTTCCAGTTGATGTTAGCGAAGATGTTGTTGATTTTATAAGCAACAATTGTGATGGGGATGCTCGGGTGGCCCTGAATGCCCTGGAGATTGCAGCTGTTACTGCAGCAGCGAGGCTACAACATGGTAAACAAAAGGAACAAGAGGGGATGGAAATGGATCTTCACACAAACGAGGAATACAAGGTTGTTGCTGCTGCTGTTGTTAGTGTTGATGATGCAAAGGAGGCACTTCAGTGCAAGCATCTTGCTTACGATAAAGCTGGGGAAGAGCACTATAACCTAATCAGTGCGTTGCACAAGTCTATGAGGGGAAGCGATGCGGATGCAGCTATTTATTGGTTGGCAAGAATGTTAGAGGGGGGTGAAGAGCCTCTTTACATTGCCCGCAGACTCATAAGGTTCGCCAGTGAGGATGTTGGTTTAGCTGATCCATCAGCTCTTAATCAGGCCGTTTCTTGCTACCAAGCTTGCCACTTCCTGGGAATGCCCGAATGCGATGTAATTCTCGCACAGTGTGTTGCTTACTTGGCCTTAGCACCTAAATCTGTTGCAGTTTATCGAGCTATAGGAGCTGCTCAGAAGGCAGTGAGGAAATCCGCTGGACAGAATGAGGGGGTGCCCCTCCATTTGAGGAATGCTCCAACCAAATTAATGAAGGAAATTGGGTATGGGAAGGGATACATCTACCCTCCGGACAACCCCTCCTCCACACAGACTTACTTGCCACCATCACTTCAAGGCCACAAGTTCCTCGATTGGTCTGCTGGCAATCCTTCTGATTGA 1680 0.506 MEEMQQLLSMGFPDELAAQALAATGGKSTVKATEWILTHKSNAANPSTFSSTFQPKLDRFFHSSQSPTPPQSQSQEEDQHSKRPKISNHSAEHPPPQQNWPTFFFKTADKKHANTHIHQPLYERLRPRTLDDVVGQDHLLAPNSLLRSAIQRNRLPSTLLWGPPGTGKTTIAKAIVKSSTSTCYRFVSLSAVTSGVKDVRDAVDEARKLRLKSNQTTVLFVDEVHRFNKSQQDSFLPVIEDGSIVFVGATTENPSFHLITPLLSRCRVLTLNPLQPHHLALLLNRAVNDTDKGLMQSVGVPVDVSEDVVDFISNNCDGDARVALNALEIAAVTAAARLQHGKQKEQEGMEMDLHTNEEYKVVAAAVVSVDDAKEALQCKHLAYDKAGEEHYNLISALHKSMRGSDADAAIYWLARMLEGGEEPLYIARRLIRFASEDVGLADPSALNQAVSCYQACHFLGMPECDVILAQCVAYLALAPKSVAVYRAIGAAQKAVRKSAGQNEGVPLHLRNAPTKLMKEIGYGKGYIYPPDNPSSTQTYLPPSLQGHKFLDWSAGNPSD 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01097 559 MobiDBLite consensus disorder prediction 59 101 - -
Spst8g01097 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 340 IPR027417 -
Spst8g01097 559 Pfam ATPase family associated with various cellular activities (AAA) 159 268 IPR003959 GO:0005524|GO:0016887
Spst8g01097 559 Gene3D - 274 349 - -
Spst8g01097 559 Gene3D - 377 480 - -
Spst8g01097 559 SMART AAA_5 154 274 IPR003593 GO:0016887
Spst8g01097 559 Pfam AAA C-terminal domain 301 402 IPR032423 -
Spst8g01097 559 PANTHER WERNER HELICASE-INTERACTING PROTEIN 1 FAMILY MEMBER 1 553 - -
Spst8g01097 559 FunFam AAA-type ATPase family protein 274 350 - -
Spst8g01097 559 SUPERFAMILY UBA-like 4 41 IPR009060 GO:0005515
Spst8g01097 559 Gene3D - 1 51 - -
Spst8g01097 559 MobiDBLite consensus disorder prediction 59 75 - -
Spst8g01097 559 Gene3D - 108 272 IPR027417 -
Spst8g01097 559 Pfam UBA/TS-N domain 3 36 IPR015940 -
Spst8g01097 559 Pfam MgsA AAA+ ATPase C terminal 403 551 IPR021886 -
Spst8g01097 559 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 1 39 IPR015940 -
Spst8g01097 559 FunFam Replication-associated recombination protein A 110 273 - -
Spst8g01097 559 SUPERFAMILY post-AAA+ oligomerization domain-like 387 551 IPR008921 GO:0003677|GO:0006260
Spst8g01097 559 Gene3D - 481 556 - -
Spst8g01097 559 CDD AAA 134 267 - -
Spst8g01097 559 SMART uba_6 2 38 IPR015940 -
Spst8g01097 559 CDD HLD_clamp_RarA 274 335 - -
Spst8g01097 559 FunFam Putative AAA family ATPase 377 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01097 Spst-Chr8 9470869 9472548 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01097 120 328 Core DNA Replication Machinery Family AT1G77470 27.907 7.44e-12 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01097 K07478 - gmx:100799257 912.138