Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01088 ATGGCGATGCAACCGAGAATCAACTATCAGTTGGCTGCGGCTATTCGATTGGGTAAGACTGCCAGGTCCAAAAGGTATTCTGTGGATTCATCGACCAAAGTGTATAATTCTATGCGGAATCAGGATCGGCCAGACACTGCTTTTACCACTCATCGGGCTAAAAAGACAGGAAAAGCCAATGCTTGCAGCGGTAGAATTTTTGTTACAGTGTCTGCTGACCACTTTGGACCTATTCCACCAGAAAATGATCCCATTAGAAACCGAGGTGTTTTGGTTGGTGACGCGTGGCATGACAGAATGGACTGTCGGCAGTGGGGTGCTCATTTTCCTCACGTTGCTGGTATTGCTGGACAGGGTAGTTATGGTGCCCAATCTGTTGTCCTCTCTGGTGGGTACGAGGATGATGAGGACCATGGTGACTGGTTCCTTTACACTGGCAGTGGTGGGAGGGATCTAAGTGGAAACAAACGCACCAGTAAGGTTCAATCCTTTGACCAGCAGTTTGAAACCTTTAATGAGGCCTTGAGAGTAAGTTGCTTAAAGGGTTATCCTGTTAGGGTTATCAGGTCACATAAGGAAAGGCGTTCCTCTTATGCACCCCAAAGTGGGTTGCGTTATGATGGGGTTTATAGAATAGAGAAATGCTGGCGTAAAGTTGGAATACAAGGCTTCAAGGTCTGTAGGTATTTGTTTGTGAGATGTGACAATGAGCCAGCACCGTGGACAAGTGATGAATGTGGAGACGGCCCATGCGAGCTGCTGCCAATGGTTGATGAGGTGGAGGACGCAACTGATATAACTGAAAGGAGGGACAAACCATCGTGGGATTATGATGAAGTTCAGAACTGCTGGCTGTGGAAGAAGCCTCCCCCAGAAAGCAGGAAACCAATTGACATTGGATCTGGAGAAGGAACATCATCCAGAGGCAAACGGAAAGCAAAAAAGGCGTCTGTGCAAAAAAAGCTATTGAAAGAGTTTGGTTGCCAATTATGCCGCAAGGTGTTGTCTTTCCCTCTTACTACACCCTGTGCTCACAACTTCTGCAAAGCCTGTTTGGAGCTTGCCTTTAAAGACCAAAGTTTCATCAGGAATAGGGCATCTGGCGGTCGCTCACTAAGGGTACAAAAGACTGTTATGAAATGTCCATCATGTTCAAGTAACATTGCTGATTTTCTTCAGAATCCACAGGTTAACAGAGAAATGCTGGCTGTCATAGAGTCTTTACAACGCCAGACTGAAGAAGCTAATTCTGAAGAGTTAAATGATAACAATGATGAAAATCTGGTTGATGATGATGATGCATCGGATGTTTCTCTGGATGATGCATCGGATGTTTCTCTGGATGATGCATCAGATGTCTCTCTGGATGATGCAACAGAGGTTTCAAAACCTTCTGATTCTATTGATAAGGTTCTGGAGGAACTTAAGGACAATGATCTGAATCAGCAGTATAAGCGAAGGAAGGAGTGA 1470 0.4531 MAMQPRINYQLAAAIRLGKTARSKRYSVDSSTKVYNSMRNQDRPDTAFTTHRAKKTGKANACSGRIFVTVSADHFGPIPPENDPIRNRGVLVGDAWHDRMDCRQWGAHFPHVAGIAGQGSYGAQSVVLSGGYEDDEDHGDWFLYTGSGGRDLSGNKRTSKVQSFDQQFETFNEALRVSCLKGYPVRVIRSHKERRSSYAPQSGLRYDGVYRIEKCWRKVGIQGFKVCRYLFVRCDNEPAPWTSDECGDGPCELLPMVDEVEDATDITERRDKPSWDYDEVQNCWLWKKPPPESRKPIDIGSGEGTSSRGKRKAKKASVQKKLLKEFGCQLCRKVLSFPLTTPCAHNFCKACLELAFKDQSFIRNRASGGRSLRVQKTVMKCPSCSSNIADFLQNPQVNREMLAVIESLQRQTEEANSEELNDNNDENLVDDDDASDVSLDDASDVSLDDASDVSLDDATEVSKPSDSIDKVLEELKDNDLNQQYKRRKE 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01088 489 ProSiteProfiles Zinc finger RING-type profile. 328 385 IPR001841 -
Spst8g01088 489 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 433 IPR013083 -
Spst8g01088 489 SMART ring_2 328 384 IPR001841 -
Spst8g01088 489 MobiDBLite consensus disorder prediction 287 314 - -
Spst8g01088 489 ProSitePatterns Zinc finger RING-type signature. 343 352 IPR017907 -
Spst8g01088 489 MobiDBLite consensus disorder prediction 410 489 - -
Spst8g01088 489 MobiDBLite consensus disorder prediction 418 455 - -
Spst8g01088 489 ProSiteProfiles YDG domain profile. 85 233 IPR003105 -
Spst8g01088 489 SUPERFAMILY PUA domain-like 59 246 IPR015947 -
Spst8g01088 489 Coils Coil 398 418 - -
Spst8g01088 489 SMART G9a_1 80 237 IPR003105 -
Spst8g01088 489 FunFam E3 ubiquitin-protein ligase ORTHRUS 2 56 251 - -
Spst8g01088 489 Pfam RING-type zinc-finger 328 368 IPR027370 -
Spst8g01088 489 Pfam SAD/SRA domain 88 236 IPR003105 -
Spst8g01088 489 Gene3D - 56 248 IPR036987 -
Spst8g01088 489 MobiDBLite consensus disorder prediction 462 489 - -
Spst8g01088 489 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED 1 422 IPR045134 -
Spst8g01088 489 SUPERFAMILY RING/U-box 315 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01088 Spst-Chr8 9413862 9416432 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01088 1 417 C2H2 Transcription Factor Family AT5G39550 61.575 0.0 545
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01088 K10638 - gmx:100781044 704.901