Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01077 ATGTGGTTGAAACAATATATGACAGAGGAACTTGAGCCAGGATCCAAGCACAGCACGGGGGAGAAGGAGGGAGGAGCTCTGGAACTTGGCATCTTAGAAACTGCAGCCAAGGCTGGACCTGGAGCTTACCTTTCTCCTTCTGATATAGCTGCTGAGATCCCAAATATAAAGAGCCCTGATACACCTGCCATGCTGGATCGCATGTTGCGCCTCTACAACATCCTCACACACTCTCTCCTTCAATTCCCTGATGATAAGGCACTATATATGGTCTTCACCCAAAAGCCGAATACTTTGTCAACAATGAAGATGATGCGTCTGTGGCTGCTTATTTTCTCATGGCACAGGACAAAGTCCTCAAAGACATATGGTGTGGAACATGTAGGTGGAGACATGTTTGTGAGTGTTCCAAAAGCTGACGCTATTTTTATGAAGCCCAAGCAAAAAGAGAGAACAGAGAAAGAGTACAAGGCATTGGCTGAAGAAGCTGGATTCCATGCATTTCGAATTGCATCTTTTTCTCTCAATACTTTTATGAGATTATTATCGTTGAGGCATGTTTTGATGTTCGCGGTAATTGGGGCATTGTGGAACTTGCAAAGGTCAGAGGGTATTCGATTTGTCATTGACAGAGACGAGTGTTTCTCCCATGATGTCAAGTACGAGGGTGACACTGTTCATGTCTCTTTTGTTGTTATTAAGGCTGATTCTCCCTGGCATTACGGCGACGAAGGTGTCGATCTCGTGGTAAAGGGACCTTCTGGTGAGCAAATTCATGATTTTCGGGACAAGACCAGTGAGAAGTTTGACTTTGTGGCTCACAAATCAGGGGTCCATAAGTTCTGCTTCACCAACAAGTCTCCTTATCATGAAACTGTCGATTTTGATGTACATGTTGGTCACTTCTCTTACTTTGAGCAACATGCGAAAGATGAACATTTTGCCCCTTTGCTGGAGCAGATAGGGAAATTGGAGGAAGCTCTCTACAACATTCAGTTTGAACAGCATTGGTTAGAGGCTCAGACTGATCGTCAAGCAATAGTGAACGATGCAATGAGCCGAAGAGCAATACACAAGGCAATTTTTGAATCAGCAGCACTAATTGGGGCTAGTGCGCTCCAAGTCTACCTTCTACAGCGATTGTTTGAACGAAAGTTGGGCACCTCAAGAGTTTAG 1176 0.4456 MWLKQYMTEELEPGSKHSTGEKEGGALELGILETAAKAGPGAYLSPSDIAAEIPNIKSPDTPAMLDRMLRLYNILTHSLLQFPDDKALYMVFTQKPNTLSTMKMMRLWLLIFSWHRTKSSKTYGVEHVGGDMFVSVPKADAIFMKPKQKERTEKEYKALAEEAGFHAFRIASFSLNTFMRLLSLRHVLMFAVIGALWNLQRSEGIRFVIDRDECFSHDVKYEGDTVHVSFVVIKADSPWHYGDEGVDLVVKGPSGEQIHDFRDKTSEKFDFVAHKSGVHKFCFTNKSPYHETVDFDVHVGHFSYFEQHAKDEHFAPLLEQIGKLEEALYNIQFEQHWLEAQTDRQAIVNDAMSRRAIHKAIFESAALIGASALQVYLLQRLFERKLGTSRV 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01077 391 Gene3D Vaccinia Virus protein VP39 119 145 IPR029063 -
Spst8g01077 391 ProSiteProfiles GOLD domain profile. 212 299 IPR009038 -
Spst8g01077 391 Pfam Dimerisation domain 26 71 IPR012967 GO:0046983
Spst8g01077 391 SUPERFAMILY "Winged helix" DNA-binding domain 26 87 IPR036390 -
Spst8g01077 391 PANTHER TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN 188 386 IPR015720 -
Spst8g01077 391 Gene3D - 25 94 IPR036388 -
Spst8g01077 391 MobiDBLite consensus disorder prediction 1 23 - -
Spst8g01077 391 Pfam emp24/gp25L/p24 family/GOLD 212 383 IPR009038 -
Spst8g01077 391 SMART EMP24_GP25L_2 204 383 IPR009038 -
Spst8g01077 391 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 124 174 IPR029063 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01077 Spst-Chr8 9346043 9352058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01077 25 81 Monolignol Biosynthesis Gene Families AT1G77530 50.000 9.99e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01077 - - gmx:100775345 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01077 8 9346043 9352058 Spst8g01077 8 9346043 9352058 ECH