Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01063 ATGCAATCAGATAATGGCAAGTTATTTATTGGGGGAATATCATGGGACACAAATGAGGAGCGACTCAGGGAGTATTTCAGTACTTACGGGGAGGTTGTGGAAGCAGTGATAATGAAGGATCGGACAACAGGTAGAGCCAGAGGATTTGGTTTTGTTGTTTTTTCGGACCCAGCTGCTGCAGAGATAGTCATAAAAGAGAAGCACAACATTGACGGAAGGATGGTTGAGGCGAAGAAAGCTGTTCCAAGGGATGATCAGAACATACTGAGTAGAAACAGTGGCAGCATACATGGTTCTCCTGGGCCAGGTCGCACTAGAAAGATATTTGTTGGAGGTTTAGCATCAACAGTGACGGAGAGTGATTTCAAGAAGTACTTTGATCAGTTTGGAACTATAACAGATGTTGTAGTTATGTATGATCACAACACTCAGAGGCCAAGAGGTTTTGGATTTATCACTTATGATTCTGAAGAGGCGGTTGACAAGGTTTTACTAAAGACATTTCATGAACTAAATGGTAAAATGGTTGAGGTCAAGCGAGCAGTTCCTAAGGAATTATCGCCAGGACCAAGCCGCACCCCACTTGGTGGATATAACTATGGTCTTAGTAGGGTCAACAGTTTCTTAAATGGCTTCACTCAGGGGTATACTCCAAGTACGGTCGGAGGCTATGGACTTCGAGCGGACGGTAGATTCAGTCCAGTTGCCAGTGGTCGAAGTGGATTTGCTCCATTTGGTTCAGGTTATGGAATGAGTATGAATTTTGAGCCTGGTTTGAATGCCGGATTTGGGGGAAATGCAAATTTCAATAGCAATCTTAGCTATGGCCGGGGAGTAAATCCTTATTTTATTGGCAGCTCCAATAGGTTTGGCAGTCCTGTTGGATTTGACAGTGGTAATGGAGGAAACAATTCTTTCTTCAGTTCTGTGACTCGAAATTTGTGGGGTAATGGTGGCCTTAGTTATGGAACAAGTTCTGCAAATTCCAATGCGTACATTGGATCAGGGAGCGGAAGTGTGGGAGGGAATACATTTGGCAACACAGGAGTCAACTGGGGTGGTTCTTCAGCAATTTCTGGGCAAGGAGGAGGGAACAACATGACACAAAGTAGTGGCAACCTGGGATATGGAAGTGGTGACAATAATTATGGTTTGGGGACTGGAGGGTATGGAAGAAACACTGGTACCACTTTTGCACCAACATCTTCGTACTCTGCATCAAATGGTGGTGTTGATGGAGCTTTTGCAGACTTTTACACTAATAGTTCAGTTTATGGGGACCCCACTTGGCGCTCTTCAAATTCTGAGAGAGATGGATCTGGTCCCTTTGGTTATGGACTTGGTGGAGCAGCTTCTGATGTTTCTACCAAGAGTTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGGCAGCCAAATAGGGGTAAGAGTTACAATCTTTTTGGCCATTTTTCTCTTGTTCATATTTTGGATTTTGAGTAA 1485 0.4377 MQSDNGKLFIGGISWDTNEERLREYFSTYGEVVEAVIMKDRTTGRARGFGFVVFSDPAAAEIVIKEKHNIDGRMVEAKKAVPRDDQNILSRNSGSIHGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLLKTFHELNGKMVEVKRAVPKELSPGPSRTPLGGYNYGLSRVNSFLNGFTQGYTPSTVGGYGLRADGRFSPVASGRSGFAPFGSGYGMSMNFEPGLNAGFGGNANFNSNLSYGRGVNPYFIGSSNRFGSPVGFDSGNGGNNSFFSSVTRNLWGNGGLSYGTSSANSNAYIGSGSGSVGGNTFGNTGVNWGGSSAISGQGGGNNMTQSSGNLGYGSGDNNYGLGTGGYGRNTGTTFAPTSSYSASNGGVDGAFADFYTNSSVYGDPTWRSSNSERDGSGPFGYGLGGAASDVSTKSSPGYVGGYTVNKRQPNRGKSYNLFGHFSLVHILDFE 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01063 494 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Spst8g01063 494 Gene3D - 4 88 IPR012677 -
Spst8g01063 494 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 475 - -
Spst8g01063 494 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Spst8g01063 494 SMART rrm1_1 107 179 IPR000504 GO:0003723
Spst8g01063 494 SMART rrm1_1 7 78 IPR000504 GO:0003723
Spst8g01063 494 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Spst8g01063 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Spst8g01063 494 Gene3D - 103 189 IPR012677 -
Spst8g01063 494 SUPERFAMILY RNA-binding domain, RBD 104 202 IPR035979 GO:0003676
Spst8g01063 494 CDD RRM2_Hrp1p 107 184 - -
Spst8g01063 494 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Spst8g01063 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Spst8g01063 494 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 69 IPR000504 GO:0003723
Spst8g01063 494 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01063 Spst-Chr8 9269683 9271454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01063 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 33.155 2.74e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01063 K14411 - gmx:100795907 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01063 8 9269683 9271454 Spst8g01063 8 9269683 9271454 ECH