Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01058 ATGGTTTCTTCAGACAAAAGTGCGGATCAAAATATCCCTTCTGATAAATTGCAGCACAGAGCGAGTCCTGATAGTGATGTTACATTGTCACAAGGTCATGCTACTAAAAATGATCTTTCTAGACCAGAGGGAGTAACAAGTACTCTTTCTATTGTAGCAAATAATGACGAGGGGAAGGATTCTGATGCTACTGCTTGTGCCTTGGAATCAGATCAAGAAGGAAGCACGTGCTCATTACCACCTGAGAAACATTTTCAGAGCCCTGATACTCTTTTGAATGAATTGCCTCCATTGCAATCCAGTCAGGAAAGTCCCTCTATAATACGTGAAAAGGTATCAAAAGATGGCTATAACTGGCGAAAATATGGCCAGAAACACGTCAAGGGGAATGAATTTATTAGGAGCTATTACAAGTGTACATTTCCAAACTGCCAGGCCAAAAAACAATTGCAGCAGTCAAATAATGGGAATATCACAGATTGTGTTTGTATCGGACAGCATAATCATCCTAGACCTCAATTGAACTCCACAGTATCAGTCGAGTGTGTTGTGCCAGTTGTTCAACAAGCAGCACGCAAGCCCTTGTTAGTCAATGTGAAAGCCAAAACATCCGTTGAACAAGGATGTTTGCCTCAACAGATCAAGCCTTTACAGTCCCTTCCCCCTACAAAAGTGTCCCCAGTTAATGAGTTGAAAGCTGCACATTTACAATTAGCTAAGGAAAGGAATCTGGTTCATGACAATGAGGATCCTGAGTCAAAGCGGCTGAAGAAAGACAATAGTAATGCGGATGTCACTGGAGTTAACATGTCAACTCGGGAATCTCGTATTGTTGTTCAGACTTCAAGTGAGGTTGATTTGGTAAATGATGGGTATCGCTGGCGCAAATATGGGCAGAAGCTAGTTAAAGGGAATGCAAACCCACGAAGTTATTATCGATGCTCAAATCCTGGATGCCCTGTCAAAAAGCATGTGGAAAGGGCCTCTCATGATTCAAAAATTGTAATAACTACCTATGAGGGACAACATGATCATGAAACCCCCCCTGGAAGGACAGTCACTCATAACGGAGATACATATACTCACACAACGTTCACTAATGGCAAGGCAGGAACCAAATCTGAAGGTGCTACTGTTGATAGAGGGGAACGAAGTGGCTTGGGCTCAGCAAGCAAATTAACAGAGCAACTAAATGACAAGTCAATTACCAAGTCAAAGGTCGGTGACATGGCTGAGTTTCACGAGATCAGCCTTTCTTACGAGGGTAGTGAAATTAAATTAAGTGAGCAACAACAAAAAGATAAATCAGGCTCTAAATATGATGATTCTGTCAGCAATGATGTTATTTGCCATTCTAGTTCTGAAGTTCCGTGTAGATCAAATGAACAGGTGAAAGGTGAGGTAAAACCTTTATCAGAAGGCACTAAGGATTGCCTTAACAAGGTAGCCATTCGTGACCCTCCCAGTACAGAAAGCGAACTTAATAAGCAATCAGCAGCTGATCCAGAACCGGTCCAAAGCTAA 1524 0.4199 MVSSDKSADQNIPSDKLQHRASPDSDVTLSQGHATKNDLSRPEGVTSTLSIVANNDEGKDSDATACALESDQEGSTCSLPPEKHFQSPDTLLNELPPLQSSQESPSIIREKVSKDGYNWRKYGQKHVKGNEFIRSYYKCTFPNCQAKKQLQQSNNGNITDCVCIGQHNHPRPQLNSTVSVECVVPVVQQAARKPLLVNVKAKTSVEQGCLPQQIKPLQSLPPTKVSPVNELKAAHLQLAKERNLVHDNEDPESKRLKKDNSNADVTGVNMSTRESRIVVQTSSEVDLVNDGYRWRKYGQKLVKGNANPRSYYRCSNPGCPVKKHVERASHDSKIVITTYEGQHDHETPPGRTVTHNGDTYTHTTFTNGKAGTKSEGATVDRGERSGLGSASKLTEQLNDKSITKSKVGDMAEFHEISLSYEGSEIKLSEQQQKDKSGSKYDDSVSNDVICHSSSEVPCRSNEQVKGEVKPLSEGTKDCLNKVAIRDPPSTESELNKQSAADPEPVQS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01058 507 Gene3D WRKY domain 102 173 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g01058 507 Gene3D WRKY domain 275 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g01058 507 MobiDBLite consensus disorder prediction 427 441 - -
Spst8g01058 507 MobiDBLite consensus disorder prediction 427 446 - -
Spst8g01058 507 SUPERFAMILY WRKY DNA-binding domain 109 172 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g01058 507 MobiDBLite consensus disorder prediction 68 83 - -
Spst8g01058 507 MobiDBLite consensus disorder prediction 364 390 - -
Spst8g01058 507 FunFam WRKY transcription factor 57 274 348 - -
Spst8g01058 507 SMART WRKY_cls 113 171 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g01058 507 SMART WRKY_cls 288 347 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g01058 507 MobiDBLite consensus disorder prediction 452 507 - -
Spst8g01058 507 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 76 363 IPR044810 GO:0003700
Spst8g01058 507 Pfam WRKY DNA -binding domain 289 346 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g01058 507 Pfam WRKY DNA -binding domain 114 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g01058 507 SUPERFAMILY WRKY DNA-binding domain 280 348 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g01058 507 ProSiteProfiles WRKY domain profile. 283 348 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g01058 507 MobiDBLite consensus disorder prediction 490 507 - -
Spst8g01058 507 ProSiteProfiles WRKY domain profile. 108 172 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g01058 507 MobiDBLite consensus disorder prediction 1 89 - -
Spst8g01058 507 MobiDBLite consensus disorder prediction 1 57 - -
Spst8g01058 507 MobiDBLite consensus disorder prediction 244 266 - -
Spst8g01058 507 FunFam WRKY transcription factor 100 173 - -
Spst8g01058 507 MobiDBLite consensus disorder prediction 244 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01058 Spst-Chr8 9233276 9235623 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01058 98 356 WRKY Transcription Factor Family AT2G04880 51.698 4.48e-83 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst8g01058 WRKY 2.8e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01058 K18834 - gmx:100781219 809.29