LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst8g01050	ATGCTCCCTCCACGACAGCAGTCACAAGTTGGTGAAGGACTACAAACTTCTCTATCTCTAGTTTCTTCAGATCCCCCCCGCCTTTCCCTTGAGGAGCCTAGACCAAACACTGGCAATCTCCGTGAATCTCCGACTGAAAGTGGCAATTCTCGGGAAATTTGGCCTACTGCCGGTGCAATAAAAAAGGAGAATGATTGCCCTGATCAGTCAGTTATACGTCGTGTTTCCGGTGCTGACAAAATTACTCTTCATGACATTGCAAGAGAACGAGTTGATATAATATGTGAGAAAATGGTTCGTCTACCTTATGAATTTCTTGACGAACTGAAAAATGGACTTCGAGTTATCCTTGAAGGAGGGAATGGCTCACAGCACAGAGAGGAGTTTTTTATTTTGCAGAAGCTTGTTCAGAGTAGATCTGACTTAACAACCAATACATTGGCAAGAACACATCGTGTGCAGCTCGAAATACTTGTTGCCATAAATACTGGAATTCAGGGATTTTTACATCCTAGCATCAGTCTATCTCAGGCTTCATTGATCGAGATATTTCTATATAAGAGATGCAGAAACCTGGCTTGTCAGAGTCAGCTTCCTGCTGAAGATTGTACCTGCGAGACATGCGCCAACGGCAATGGTTTCTGCAATCTGTGCATGTGCGTCATCTGCAGCAAGTTTGACTTTGAAGTAAACACATGCCGCTGGATTGGATGTGATCTTTGTTCTCATTGGACCCACACTGATTGTGCCATTCGTGAGCAACTCATTTGTATGGGCCCTGCTACAAGGCAGGGTACAGGGCCCAGTGAAATGGTTTTTAAGTGTCACGCATGCAATAGGACTTCAGAACTGCTGGGTTGGGTTAAAGATGTCTTCCAGCATTGTGTACTGTCATGGGATGGAGAGGCCCTGATCAGGGAACTTGATTTTGTCAGTAGGATCTTTCATGGAAGTAAAGACCCACGGGGGAGGACACTCCATTGGAAGTGTGATGATCTCAAGGAAAATTTGAAAAGTGGGAAAGTGGAATCTAAGGCAGCATGCAAGGCAATATTGATGGTTTTCAAAGAGCTTGAGCTGGACTCTCAAAAGACCCTGGAAAATGCTGACAGTGAAAGTGGAAGGCTGATTGCTCCGCAGGAGGCATGCAGTAGAATTTCGGAGGTGGTGCATGAGGCTGTAAGAAATATGGAAATGGTAGCTGATGAGAAGATGAGAATGTTCAAGAAGGCTCGGTTGTCTTTTGATGCTTGTGAACGTGAATTAGCAGACAAGGCCAGAGAAGCAGGAGAACTAAACATGGATAGGCAAAAAAAGAAGTTAGAGATTGAAGAACTGGAGAGAATTGTGAGGCTTAAAAATGCAGAGGCTGATATGTTCCAGATGAAGGCTAATGAAGCTAAAAGAGAAGCTGAGCGGCTCCAGAGGATTCTTCTTGCCAAGTCAGATAAATCAGAAGAAGAATATACTAGCAATTATTTGAAGCAAAGATTAAGTGAGGCCGAGGCTGAGAAACAATATCTGTATGAGAAGATTAAAATGCAGGAGACTACTCGCTTAATGCAAAGCAGTGGTGGTGGTGGCGGTGACTCCTTGATGTTTTCCAAAATCCATGATATTCTCTATAATGTTCCTCCCAGTGCAGACGGTCCATCTAATGACTGCCATCCTTTTAGAAAAAACCCATAA	1689	0.4381	MLPPRQQSQVGEGLQTSLSLVSSDPPRLSLEEPRPNTGNLRESPTESGNSREIWPTAGAIKKENDCPDQSVIRRVSGADKITLHDIARERVDIICEKMVRLPYEFLDELKNGLRVILEGGNGSQHREEFFILQKLVQSRSDLTTNTLARTHRVQLEILVAINTGIQGFLHPSISLSQASLIEIFLYKRCRNLACQSQLPAEDCTCETCANGNGFCNLCMCVICSKFDFEVNTCRWIGCDLCSHWTHTDCAIREQLICMGPATRQGTGPSEMVFKCHACNRTSELLGWVKDVFQHCVLSWDGEALIRELDFVSRIFHGSKDPRGRTLHWKCDDLKENLKSGKVESKAACKAILMVFKELELDSQKTLENADSESGRLIAPQEACSRISEVVHEAVRNMEMVADEKMRMFKKARLSFDACERELADKAREAGELNMDRQKKKLEIEELERIVRLKNAEADMFQMKANEAKREAERLQRILLAKSDKSEEEYTSNYLKQRLSEAEAEKQYLYEKIKMQETTRLMQSSGGGGGDSLMFSKIHDILYNVPPSADGPSNDCHPFRKNP	562

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst8g01050	562	Pfam	PHD - plant homeodomain finger protein	189	312	IPR032881	-
	Spst8g01050	562	SMART	PHD_3	219	279	IPR001965	-
	Spst8g01050	562	MobiDBLite	consensus disorder prediction	1	52	-	-
	Spst8g01050	562	PIRSF	UCP025218	1	549	-	-
	Spst8g01050	562	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	299	318	IPR004082	-
	Spst8g01050	562	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	139	154	IPR004082	-
	Spst8g01050	562	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	180	201	IPR004082	-
	Spst8g01050	562	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	97	119	IPR004082	-
	Spst8g01050	562	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	154	169	IPR004082	-
	Spst8g01050	562	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	444	464	IPR004082	-
	Spst8g01050	562	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	483	505	IPR004082	-
	Spst8g01050	562	PRINTS	Arabidopsis thaliana 130.7kDa hypothetical protein signature	226	246	IPR004082	-
	Spst8g01050	562	MobiDBLite	consensus disorder prediction	543	562	-	-
	Spst8g01050	562	MobiDBLite	consensus disorder prediction	36	52	-	-
	Spst8g01050	562	Pfam	Coiled-coil region of Oberon	409	541	IPR032535	-
	Spst8g01050	562	Coils	Coil	429	484	-	-
	Spst8g01050	562	CDD	PHD_OBE1_like	219	278	IPR047578	-
	Spst8g01050	562	PANTHER	VERNALIZATION-INSENSITIVE PROTEIN 3	62	543	IPR004082	-
	Spst8g01050	562	MobiDBLite	consensus disorder prediction	1	24	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst8g01050	Spst-Chr8	9198478	9200267	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst8g01050	189	291	PHD Gene Family	AT5G57380	32.075	3.22e-09	57.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst8g01050	-		-	pvu:PHAVU_008G285600g	1005.74