Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01020 ATGAAGGAGAATCTTGAAGAAACTAAGAAAGAGGACACGTGGCTCACTTTGCTGTCAATTCTCGGACGCTGTGGGTCCCGCCCTCAGGCCACGCGTTCACCGGATTCTGCTACTCAAATGCGTGTCACGTGCCCCAGAAATTTTGGGCATTTGGTTGCTGGGCACTGGCTAAGATTTGAAAGATTTTATCTTTACCTTGAAACAGTTGCAGCTCCTGCTGAAGATCAACTTGGGGAAGCCACAAGGGAAATTACTGGTCTTGATTGGAATATGGAATCCAAATCTGAAACTGCTAATCAGCCGAGGTCTAATCCACGTTCCTTTACACCTAACAATGTTTATTCTGAACCCTGGTGGCGAGGTATTCAGTACAATTCTGTTCCGCAAGCAATGTCAGGGGTGAATGCATCAAATTCATCTTCACTTGAACGCCCTAACGGTGATTCAGAATCCAGTGGAGGTCAATCTTTGTCCAATAATGGGTTGAACGAGGAAGAAGATGATGCCACCAAAGAATCGCAACCCACTGCTCCTAATCTATCAGGAAATTATGGACAAGACCAACAAGCGATGCTGCATTCTTCATCATCTGCACCTTCTAGGCGTGATGATTGCCTGACACAGGTTCCACAGCTGGAACTTATCGGTCATTCATTTGGATATGCTCCTTTTATGGGAATGCCTCATGCCAGAATGGCTTTGCCACTTGAGATGGCTCAAGAGCCTGTTTATGTGAATGCCAAACAATACCAAGGAATTCTGAGACGAAGACAGGCTCGTGCTAAAGCAGAGCTTGAAAAGAAATTAATAAAAGTCAGAAAGCCATATCTTCATGAATCTCGGCATCAGCATGCTATGAGAAGAGCAAGAGGTAACGGAGGGCGCTTTGCAAAGAAAACTGATGTCGAGGCTTCAAACCACGTGAACAAAGAAAAGGATGAGGGTGCAGGTCCAGTCCCATTGTCACAGTCAATATGTTCATCTGGTTTAGGACCAATACCCTCGGATTCTGCTTCGAACTGGAACCCTTCCAGTGTGCAACAAGACGCAAAAGGATCTCAAGTGCATGAGAGAATTGAAAAACACAACTATGCAAATGTTTTGCAGTCATCATCTACCTTTTGTTTGCACTCGGGTGAGAGAGGGGAGGAAGGGGACTGTTCAGGTCAACAACGGGGAAGCATCTCCTCTGAGCACACCTCACAGAGGCGTCTTGCTATTCAGTAA 1227 0.458 MKENLEETKKEDTWLTLLSILGRCGSRPQATRSPDSATQMRVTCPRNFGHLVAGHWLRFERFYLYLETVAAPAEDQLGEATREITGLDWNMESKSETANQPRSNPRSFTPNNVYSEPWWRGIQYNSVPQAMSGVNASNSSSLERPNGDSESSGGQSLSNNGLNEEEDDATKESQPTAPNLSGNYGQDQQAMLHSSSSAPSRRDDCLTQVPQLELIGHSFGYAPFMGMPHARMALPLEMAQEPVYVNAKQYQGILRRRQARAKAELEKKLIKVRKPYLHESRHQHAMRRARGNGGRFAKKTDVEASNHVNKEKDEGAGPVPLSQSICSSGLGPIPSDSASNWNPSSVQQDAKGSQVHERIEKHNYANVLQSSSTFCLHSGERGEEGDCSGQQRGSISSEHTSQRRLAIQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01020 408 ProSiteProfiles NF-YA/HAP2 family profile. 239 299 IPR001289 GO:0003700|GO:0006355
Spst8g01020 408 MobiDBLite consensus disorder prediction 303 356 - -
Spst8g01020 408 ProSitePatterns NF-YA/HAP2 subunit signature. 244 264 IPR018362 GO:0003677|GO:0016602
Spst8g01020 408 PRINTS CCAAT-binding transcription factor subunit B signature 242 264 IPR001289 GO:0003700|GO:0006355
Spst8g01020 408 PRINTS CCAAT-binding transcription factor subunit B signature 273 296 IPR001289 GO:0003700|GO:0006355
Spst8g01020 408 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 241 296 IPR001289 GO:0003700|GO:0006355
Spst8g01020 408 MobiDBLite consensus disorder prediction 173 204 - -
Spst8g01020 408 MobiDBLite consensus disorder prediction 131 163 - -
Spst8g01020 408 MobiDBLite consensus disorder prediction 88 112 - -
Spst8g01020 408 MobiDBLite consensus disorder prediction 389 408 - -
Spst8g01020 408 MobiDBLite consensus disorder prediction 321 352 - -
Spst8g01020 408 MobiDBLite consensus disorder prediction 377 408 - -
Spst8g01020 408 Gene3D - 239 301 - -
Spst8g01020 408 MobiDBLite consensus disorder prediction 131 204 - -
Spst8g01020 408 SMART cbf3 238 299 IPR001289 GO:0003700|GO:0006355
Spst8g01020 408 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 101 372 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01020 Spst-Chr8 8833010 8839293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01020 150 408 CCAAT-HAP2 Transcription Factor Family AT3G20910 45.965 1.77e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Spst8g01020 CBFB_NFYA 1.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01020 K08064 - gmx:102664020 528.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g00030 6 565048 568698 Spst8g01020 8 8833010 8839293 PCT