Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01018 ATGGCGCATAGGTTGCTCAGAGACCACGAAGCCGACGGTTGGGAGCGTTCCGATTTCCCCATCATCTGCGAATCCTGCCTCGGTGACAGCCCCTATGTTCGAATGACAAGAGCAGAGTATGACAAGGAGTGCAAGATTTGTACTCGGCCATTCACTGTGTTTAGATGGAGACCTGGTAGAGATGCTAGATATAAGAAAACTGAGATATGTCAGACATGTAGTAAGTTGAAAAATGTCTGTCAAGTGTGCCTTCTTGATCTTGAATATGGACTACCTGTTCAAGTTCGAGACACGGCTCTCAGTATTGATTCCAATGACTCTATTCCAAAGAGTGACGTTAATAGGGAGTATTTTGCTGAAGAGCATGACCGTAGGGCTAGAGCTGGTATAGATTATGAATCCTCCTATGGTAAAGCACGCCCTAATGATACTATCCTGAAGCTTCAAAGAACAACACCATATTACAAAAGAAACCGGGCGCATGTTTGCAGTTTCTACATAAGGGGTGAATGTACCAGAGGAGCTGAGTGCCCTTATAGACATGAGATGCCAGAAACTGGGGAATTGTCTCAACAAAATATTAAAGATCGTTATTATGGGGTGAATGATCCAGTGGCCTTGAAGCTACTTGGCAAGGCAGGGGAGATGGCCACCCTGGAGGCTCCTGAGGATGAGAGCATTAAAACTCTCTATGTTGGTGGACTTGATGCTAGGGTCACTGAGCAGGATTTGCGGGATCACTTCTATGCCCATGGGGAAATTGAATCCGTAAAAATGGTTCTCCAACGGGCTTGTGCTTTTGTAACATATACTACCCGAGAAGGTGCAGAAAAGGCAGCAGAAGAACTCTCCAACAAACTGGTTATTAAAGGCTTAAGGCTAAAGCTGATGTGGGGCAGGCCTCAGACCTCAAAACCCGAGTTAGATGGCTCTGATCAAGCAAGGCAGCAGGCATCTGTGGCTCATAGTGGATTGCTGCCTCGAGCAGTTATATCACAGCAGCAGAACCTGGACCAAACACAAGGAACACTATTCTATAACAATCCACCACCTCTGCAGCAGGAAAGAAGCTACTACCCATCAATGGATCCTCAAAGAATGGGTGCTCTTATTTCATCTCAAGATGGTCCTCCTGGTGGACCTTCTGGGTCAGGGGAGAACAAGTCCAGTTTGGAGAAGCAGCACTATGCCCATCCAATGATGCCTCCTCCACCTGGCCAATATCATCATCAGTATTATCCTCCATATGGTTATATGCCGCCAGTTCCCCCTTATCAACAGTTCCCACCTCCATACAATACTGCTGTGGCTCCATCCCAGCCAGCCGCTACAAATTATCCTTATCAGCATTCTACGCAGCCAGGGACTTCGCAAACAGGGTCTGGACAGGCTGCACATGCCCCAGCTGAAACTGGAACATCAACATCTGGGTCACAGCATCAATAA 1446 0.471 MAHRLLRDHEADGWERSDFPIICESCLGDSPYVRMTRAEYDKECKICTRPFTVFRWRPGRDARYKKTEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALSIDSNDSIPKSDVNREYFAEEHDRRARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYRHEMPETGELSQQNIKDRYYGVNDPVALKLLGKAGEMATLEAPEDESIKTLYVGGLDARVTEQDLRDHFYAHGEIESVKMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGRPQTSKPELDGSDQARQQASVAHSGLLPRAVISQQQNLDQTQGTLFYNNPPPLQQERSYYPSMDPQRMGALISSQDGPPGGPSGSGENKSSLEKQHYAHPMMPPPPGQYHHQYYPPYGYMPPVPPYQQFPPPYNTAVAPSQPAATNYPYQHSTQPGTSQTGSGQAAHAPAETGTSTSGSQHQ 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01018 481 SUPERFAMILY RNA-binding domain, RBD 222 307 IPR035979 GO:0003676
Spst8g01018 481 FunFam Zinc finger CCCH domain-containing protein 4 149 208 - -
Spst8g01018 481 FunFam Zinc finger CCCH domain-containing protein 40 213 309 - -
Spst8g01018 481 MobiDBLite consensus disorder prediction 341 390 - -
Spst8g01018 481 MobiDBLite consensus disorder prediction 437 481 - -
Spst8g01018 481 SMART rrm1_1 229 297 IPR000504 GO:0003723
Spst8g01018 481 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 230 288 IPR000504 GO:0003723
Spst8g01018 481 PANTHER PRE-MRNA-SPLICING FACTOR RBM22 1 376 IPR039171 GO:0003723
Spst8g01018 481 MobiDBLite consensus disorder prediction 341 360 - -
Spst8g01018 481 ProSiteProfiles Zinc finger C3H1-type profile. 157 184 IPR000571 GO:0046872
Spst8g01018 481 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723
Spst8g01018 481 Gene3D - 212 307 IPR012677 -
Spst8g01018 481 SMART c3hfinal6 157 183 IPR000571 GO:0046872
Spst8g01018 481 CDD RRM_RBM22 227 300 - -
Spst8g01018 481 MobiDBLite consensus disorder prediction 430 481 - -
Spst8g01018 481 Gene3D - 149 205 - -
Spst8g01018 481 Pfam Torus domain 139 194 IPR032297 -
Spst8g01018 481 SUPERFAMILY CCCH zinc finger 159 182 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01018 Spst-Chr8 8820563 8824076 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01018 215 289 Eukaryotic Initiation Factors Gene Family AT1G49760 33.750 5.79e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01018 K12872 - gmx:100778975 858.596
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01018 8 8820563 8824076 Spst8g01018 8 8820563 8824076 ECH
Spst6g02644 6 84555872 84559576 Spst8g01018 8 8820563 8824076 PCT