Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01007 ATGGGGACTAAGTCAGCTGTGGATTTAATGGAGTCTTCATCTGAGGTTCACTTTTCTGGAATTTACATGGATGGCTTAGAGCAAAGAAACGCTCGCACGGAGCAACCAACTACTTCCGCCACCGACATGAATAAACAACCTTTTGTGATAGGTGTTGCTGGTGGAGCAGCATCCGGTAAGACATCGGTTTGTGATAGGATTATTCAGCAGCTTCATGACCAACGAGTTGTACTTGTTAATCAGGATTCTTTTTACCATAATTTGACTGAGGAGGAACTTACAAGAGTACAAGATTACAACTTTGACCATCCTGAAGCTTTTAATACTGAGCAATTGCTCCGTGTAATGGACAAGTTGAAGCGTGGCCAAGCAGTAGATATTCCAAAGTATGACTTTAAGGGCTACAAAAGTGATGTTTTTCCGGCAAGACGGGTAAACATGGCGGATGTTATTATTTTGGAAGGTATCCTTGTTTTCCATGATCCACGAGTGCGGGCAATGATGAATATGAAGATATTTGTCGACACAGATGCTGATGTTCGTTTGGCTAGAAGAATTAAGCGTGATATTGCTGAAAATGCTCGTGATGTTGGAGCGGTGCTCGATCAGTATTCTAAATTTGTGAAGCCGGCTTTTGATGACTTTATTCTTCCCACCAAGAAGTATGCTGATATCATTATTCCCCGTGGAGGAGATAATCATGTAGCTATTGATTTGATAGTACAACATATTCGCACGAAGCTTGGTCAGCATGACTTGTGTAAAATATACCCTAGCTTATATGTCATTCAGTCTACTTTTCAGATACGGGGCATGCATACCCTGATTCGTGATTCTCAAACGACGAAACATGACTTTGTATTTTATTCGGACCGTTTGATTCGTTTGGTTGTAGAACATGGCCTAGGACACCTTCCATTTACAGAAAAGCAAGTAATCACTCCAACTGGATCGGTTTACAGTGGCGTGGACTTCTGTAAGAGGTTGTGTGGTGTTTCCATCATCCGGAGTGGCGAGAGCATGGAAAATGCTTTACGAGCATGCTGCAAAGGCATCAAGATTGGGAAAATTCTTATTCACAGAGAAGGTGACAATGGTCAACAGCTAATATACGAGAAGTTGCCTAATGATATCTCAAATAGACATGTATTGCTGTTGGATCCTGTCTTAGGCACAGGTAATTCGGCTGCTCAAGCAATTTCTTTACTTTTAAAGAAGGGTGTACCAGAGTCCAACATTATATTTCTCAATCTCATATCAGTAAGCACCTCAAGGTGTTCATATGGTCTGCAAAAGTTTCCCCAGAATAAAGATAGTGACATCTGA 1326 0.4133 MGTKSAVDLMESSSEVHFSGIYMDGLEQRNARTEQPTTSATDMNKQPFVIGVAGGAASGKTSVCDRIIQQLHDQRVVLVNQDSFYHNLTEEELTRVQDYNFDHPEAFNTEQLLRVMDKLKRGQAVDIPKYDFKGYKSDVFPARRVNMADVIILEGILVFHDPRVRAMMNMKIFVDTDADVRLARRIKRDIAENARDVGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPSLYVIQSTFQIRGMHTLIRDSQTTKHDFVFYSDRLIRLVVEHGLGHLPFTEKQVITPTGSVYSGVDFCKRLCGVSIIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISNRHVLLLDPVLGTGNSAAQAISLLLKKGVPESNIIFLNLISVSTSRCSYGLQKFPQNKDSDI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01007 441 FunFam Uridine kinase 44 250 - -
Spst8g01007 441 SUPERFAMILY PRTase-like 250 421 IPR029057 -
Spst8g01007 441 Gene3D - 43 250 IPR027417 -
Spst8g01007 441 PANTHER URIDINE KINASE 38 376 - -
Spst8g01007 441 CDD UMPK 49 247 IPR000764 -
Spst8g01007 441 CDD PRTases_typeI 324 425 IPR000836 -
Spst8g01007 441 Gene3D - 251 436 IPR029057 -
Spst8g01007 441 NCBIfam uridine kinase 45 247 IPR000764 -
Spst8g01007 441 Pfam Uracil phosphoribosyltransferase 265 422 - -
Spst8g01007 441 FunFam Probable uracil phosphoribosyltransferase 250 437 - -
Spst8g01007 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 240 IPR027417 -
Spst8g01007 441 PRINTS Uridine kinase signature 215 228 - -
Spst8g01007 441 PRINTS Uridine kinase signature 77 88 - -
Spst8g01007 441 PRINTS Uridine kinase signature 193 204 - -
Spst8g01007 441 PRINTS Uridine kinase signature 179 189 - -
Spst8g01007 441 PRINTS Uridine kinase signature 47 64 - -
Spst8g01007 441 PRINTS Uridine kinase signature 122 137 - -
Spst8g01007 441 Pfam Phosphoribulokinase / Uridine kinase family 49 235 IPR006083 GO:0005524|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01007 Spst-Chr8 8748902 8755687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01007 1 437 PRT Gene Family AT4G26510 79.819 0.0 721
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01007 K00876 - gmx:100798205 790.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g01007 8 8748902 8755687 Spst8g01007 8 8748902 8755687 ECH
Spst6g00005 6 329943 340957 Spst8g01007 8 8748902 8755687 PCT