Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01003 ATGGGGTTTCCCCCCTCTACAATCCCAAAACAGATCATCACTTCTCTTCTCTTAGCAATGTCTGTAAGCTTAATGAATCACTCACTTCCTACCAAAATCTTTTCCCTCGCCTTGCTTCTTTTAATAAACTCTCTTTTGTTTCCTTGTTGTTACTCCCAGCTGAATGAGCAAGGGCAAGCTCTTTTAGCATGGAAGAACAGTTTAAACAGTACTGGAAATGCATTAGCATCTTGGAATCCTTCCAACCCAAGCCCATGCAATTGGTTTGGGGTGCGCTGCAACTTTCAAGGAGAGGTGGTTGAGATAAACCTGAAGTCAGTGAACTTGCAAGGCTCATTACCTTCAAATTTGCAACCTCTTAGGTCTTTGAAGATTCTTGCCCTCTCAACAGCCAACATCACGGGCAGGATTCCAAAGGAGATTGGAGACTGTAAAGAGCTCATTGTCATTGATCTCAGTGGCAATTCTCTCTTTGGTGAAATCCCAGAAGAAATTTGCAGGCTGAGCAAACTGCAGACTTTAGCTTTGCATGCCAATTTTCTTGAAGGCAAAATTCCATCCAGCATAGGAAATTTATCAAGTCTTGTGAACTTGACACTCTATGACAACAAACTGAGTGGCGAAATTCCAAATAGTATTGGCTCATTAACTGAGCTCCAAGTTTTGAGAGTAGGAGGAAACACAGACCTTAAGGGTGAGGTGCCGTGGGAAATTGGAAACTGCACCAACTTGGTGGTGTTAGGCCTTGCAGAAACCAGCATTTCTGGGAGCCTTCCTTCTTCAATAGGGCTGCTGAAAAGAATTCAGACCATAGCCATTTACACAACTCTGCTGTCAGGCTCTATACCAGAAGAGATAGGGAAGTGCAGAGAGTTGCAGAACCTGTACTTGTATCAGAACTCAATCACTGGTTCAATCCCAAGTCAAATTGGAGACCTCAGCAAGCTTCAGAATCTTCTCTTATGGCAAAACAATATAGTAGGTACAATCCCAGAAGAGCTTGGAAGCTGCAGTCAACTGGAAGTCATAGACATGTCAGAAAATCTTCTCACAGGTAGCATACCAACCAGTTTTGGTAAGCTAACAAATCTGCAAGGGCTTCAACTGAGTGTCAATAAGCTTTCAGGCATTATACCTCCTGAAATCACAAATTGCACTTCCCTGACTCAGCTGGAAGTTGACAATAATGCTATTTCTGGAGAGATTCCTCGTCCTATTGGCAACTTGAGAGGCTTGACTCTCTTCTTTGCATGGAAGAACAAGCTCACAGGAAAAATCCCAGATAGTCTTTCACAGTGCCAAGATCTTCAGGCACTTGATCTCTCTTACAACAATTTAACTGGTCCAATACCCAAACAACTTTTTGGGCTGAAGAACCTCACTAAACTGTTGCTTCTTTCCAATGATTTGTCAGGCTTTATACCACCTGAGATAGGTAACTCCACAAGTCTCTACAGGTTGAGGTTAAATCACAATAGACTGTCAGGTAGCGTTCCATCTGAGATTGCCAACTTGAAGAATTTGAACTTTTTGGACGTAAGCAGCAATCATCTTGTAGGGGAGATTCCTCCTACACTATCCAGATGCCAAAATCTTGAGTTTCTGGACCTCCACTCAAATAGTCTCATTGGCACAGTTCCAGACAATCTGCCCAAAAACCTGCAGTTAATCGACCTCTCAGACAACAGGCTCACAGGTGAACTGAGCCATTCCATTGGATCATTAACTGAATTAGCAAAACTCAACTTGGGAAAGAATCAACTCAGCGGAATCATCCCTGCTGAGATCCTATCTTGCTCCAAGTTACAACTTTTGGACTTGGGAAGCAATAGTTTCTCTGGAGAAATTCCCAAGGAAGTTGCTCAAATTCCTTCACTAGAAATCTTGGTCAATCTTAGTTGTAACCAGTTTTCTGGTGAAATCCCACCTCAGTTCTCCGGTCTTAGAAAACTCGGAGTGCTTGACCTCTCCCACAACAACCTCTCAGGAAATTTGGATGCTCTTTCTGACCTTCAAAACCTCGTTTCGTTAAATGTTTCCTTCAATGGCTTCACTGGAGAATTGCCTAACACACCATTCTTCAGGAAACTCCCTCTCAGTGATCTCACAGGAAATGATGGCCTCTACATTGTCGGAGGTGTTGTAACTGCAGCTGATAGAAAGGAAGCCAAGGGTCATGCCAAGTTGGCTATGAAGATTATACTGTCCATTCTCTTAAGCACTAGCGCAGTACTTGCACTGCTCACAATCCATGTCTTAATGCGTGCTCATGTTTCTAACAAAGCACTCATGGGAAACAACAATTGGGTGATAACTTTGTATCAAAAGTTTGAATTCTCTATAGATGATATTGTCCAGAATTTGACATCATCCAATGTGATTGGCACTGGAAGCTCTGGAGTTGTGTACAAGGTTACAGTTCCAAATGGTCAAACACTGGCAGTTAAAAAGATGTGGTCATCCGCAGAGTCAGAAGCATTTACTTCTGAAATTCAAACTCTAGGTTCAATTAGACAAAAGAACATCATGAAGCTTCTAGGTTGGGGGTCCAGCAAGAACATGAAGCTGCTGTTTTATGAGTACCTCCCTAATGGAAGCTTGAGTTCATTACTTCATGGTTCAGGAAAGGGCAAAGCAGAATGGGAGACCCGATTTGATGTAATGTTAGGAGTGGCTCATGCACTTGCATATTTGCACCATGACTGTGAGCCTTCGATATTGCATGGAGATGTCAAAGCCATGAACGTGTTGTTAGGTCCTGGTTATCAGCCTTACCTTGCTGATTTTGGCCTAGCTAGAATTGCAATGGAAAAGGGTGATTATACTAATTCCAAGCCAGTTCAAAGACCCTACCTTGCTGGCTCCTATGGTTACATGGCTCCAGGTACTTTTTTCATTCCAAAACATGCATCTATGCAGCAGATCACTGAGAAGAGTGATGTGTACAGTTTTGGTGTGGTCCTACTTGAGGTCCTGACAGGAAGGCACCCCCTAGACCCAACACTTCCGGAGGGTGGTGCACACTTGGTTCAGTGGGTTAGGAATCACTTAGCAAGCAAAGGAGACCCATCTGACATTCTTGACCCAAAGCTGAGAGGGAAAAATAATTCCACTGTGCATGAAATGCTACAAACTCTAGCCTTGTCATTACTATGTGTTAGCACACGAGCTGAGGACCGTCCAACAATGAAGGACACTGTTGCAATGCTCAAGGAAATTCGACTTGTTGAGGCCCCAAGCACAGGTACTGCCTGA 3255 0.4335 MGFPPSTIPKQIITSLLLAMSVSLMNHSLPTKIFSLALLLLINSLLFPCCYSQLNEQGQALLAWKNSLNSTGNALASWNPSNPSPCNWFGVRCNFQGEVVEINLKSVNLQGSLPSNLQPLRSLKILALSTANITGRIPKEIGDCKELIVIDLSGNSLFGEIPEEICRLSKLQTLALHANFLEGKIPSSIGNLSSLVNLTLYDNKLSGEIPNSIGSLTELQVLRVGGNTDLKGEVPWEIGNCTNLVVLGLAETSISGSLPSSIGLLKRIQTIAIYTTLLSGSIPEEIGKCRELQNLYLYQNSITGSIPSQIGDLSKLQNLLLWQNNIVGTIPEELGSCSQLEVIDMSENLLTGSIPTSFGKLTNLQGLQLSVNKLSGIIPPEITNCTSLTQLEVDNNAISGEIPRPIGNLRGLTLFFAWKNKLTGKIPDSLSQCQDLQALDLSYNNLTGPIPKQLFGLKNLTKLLLLSNDLSGFIPPEIGNSTSLYRLRLNHNRLSGSVPSEIANLKNLNFLDVSSNHLVGEIPPTLSRCQNLEFLDLHSNSLIGTVPDNLPKNLQLIDLSDNRLTGELSHSIGSLTELAKLNLGKNQLSGIIPAEILSCSKLQLLDLGSNSFSGEIPKEVAQIPSLEILVNLSCNQFSGEIPPQFSGLRKLGVLDLSHNNLSGNLDALSDLQNLVSLNVSFNGFTGELPNTPFFRKLPLSDLTGNDGLYIVGGVVTAADRKEAKGHAKLAMKIILSILLSTSAVLALLTIHVLMRAHVSNKALMGNNNWVITLYQKFEFSIDDIVQNLTSSNVIGTGSSGVVYKVTVPNGQTLAVKKMWSSAESEAFTSEIQTLGSIRQKNIMKLLGWGSSKNMKLLFYEYLPNGSLSSLLHGSGKGKAEWETRFDVMLGVAHALAYLHHDCEPSILHGDVKAMNVLLGPGYQPYLADFGLARIAMEKGDYTNSKPVQRPYLAGSYGYMAPGTFFIPKHASMQQITEKSDVYSFGVVLLEVLTGRHPLDPTLPEGGAHLVQWVRNHLASKGDPSDILDPKLRGKNNSTVHEMLQTLALSLLCVSTRAEDRPTMKDTVAMLKEIRLVEAPSTGTA 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01003 1084 PRINTS Leucine-rich repeat signature 648 661 - -
Spst8g01003 1084 PRINTS Leucine-rich repeat signature 436 449 - -
Spst8g01003 1084 ProSiteProfiles Leucine-rich repeat profile. 650 672 IPR001611 GO:0005515
Spst8g01003 1084 Pfam Leucine rich repeat 630 683 IPR001611 GO:0005515
Spst8g01003 1084 Pfam Leucine rich repeat 339 398 IPR001611 GO:0005515
Spst8g01003 1084 Pfam Leucine rich repeat 418 470 IPR001611 GO:0005515
Spst8g01003 1084 Pfam Leucine rich repeat 553 611 IPR001611 GO:0005515
Spst8g01003 1084 SUPERFAMILY RNI-like 306 676 - -
Spst8g01003 1084 Gene3D Transferase(Phosphotransferase) domain 1 862 1080 - -
Spst8g01003 1084 ProSitePatterns Serine/Threonine protein kinases active-site signature. 906 918 IPR008271 GO:0004672|GO:0006468
Spst8g01003 1084 Pfam Leucine rich repeat N-terminal domain 55 94 IPR013210 -
Spst8g01003 1084 FunFam Leucine-rich receptor-like protein kinase family protein 356 628 - -
Spst8g01003 1084 Gene3D Phosphorylase Kinase; domain 1 754 861 - -
Spst8g01003 1084 SMART LRR_typ_2 192 216 IPR003591 -
Spst8g01003 1084 SMART LRR_typ_2 648 671 IPR003591 -
Spst8g01003 1084 SMART LRR_typ_2 361 385 IPR003591 -
Spst8g01003 1084 SMART LRR_typ_2 120 144 IPR003591 -
Spst8g01003 1084 SMART LRR_typ_2 505 529 IPR003591 -
Spst8g01003 1084 SMART LRR_typ_2 575 599 IPR003591 -
Spst8g01003 1084 SMART LRR_typ_2 530 553 IPR003591 -
Spst8g01003 1084 SMART LRR_typ_2 457 481 IPR003591 -
Spst8g01003 1084 SMART LRR_typ_2 313 337 IPR003591 -
Spst8g01003 1084 Gene3D Ribonuclease Inhibitor 630 712 IPR032675 -
Spst8g01003 1084 Gene3D Ribonuclease Inhibitor 470 551 IPR032675 -
Spst8g01003 1084 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g34110 213 304 - -
Spst8g01003 1084 ProSitePatterns Protein kinases ATP-binding region signature. 794 817 IPR017441 GO:0005524
Spst8g01003 1084 Gene3D Ribonuclease Inhibitor 552 629 IPR032675 -
Spst8g01003 1084 Gene3D Ribonuclease Inhibitor 54 213 IPR032675 -
Spst8g01003 1084 FunFam Putative LRR receptor-like serine/threonine-protein kinase 629 714 - -
Spst8g01003 1084 PANTHER UNNAMED PRODUCT 38 548 - -
Spst8g01003 1084 SMART serkin_6 788 1070 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01003 1084 SUPERFAMILY Protein kinase-like (PK-like) 775 1070 IPR011009 -
Spst8g01003 1084 ProSiteProfiles Protein kinase domain profile. 788 1075 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01003 1084 SUPERFAMILY L domain-like 55 327 - -
Spst8g01003 1084 Pfam Protein kinase domain 791 1067 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g01003 1084 Gene3D Ribonuclease Inhibitor 226 469 IPR032675 -
Spst8g01003 1084 FunFam Leucine-rich receptor-like protein kinase family protein 54 212 - -
Spst8g01003 1084 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 862 1083 - -
Spst8g01003 1084 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 757 861 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01003 Spst-Chr8 8713368 8716818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01003 50 1083 Receptor kinase-like Gene Family AT4G26540 65.996 0.0 1326
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst8g01003 Pkinase 9.4e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01003 - - gmx:100813139 1818.51