Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g01001 ATGGTTCCCTTTTCTTCAAATTCTGCCACAGAAGATAGAGCGGCTAGTGCTCGAAACAGGCCTCCACGTGTCACCCCTCCCTCCTTTCTGGTTCGGGTAGCCATGAGAATATCCAGAGCAAGATGGTTTACCTTTTTGAGAAGAGTTTTTCATTACCAAAATGGATCAAGGTCCAATCTTGGTTCCAACCCTTTCAATTCTAGCACTTGGATGATGCTGGAGTTTATTGCCTTGATTGTCCAAATAACCATTACAACATTCACCTTGGCTATTGCCAAGAGGGAGAGACCTATTTGGCCTATGAGGATATGGATTTCTGGTTATGATATTGGTGTTGTTCTTAATCTGCTGCTACTTTATGGGCGCTACCGTCAAATTTATCTCACACGAGGAGATGCTCTCGACCTTTCTGATATAGAACAGCAGACCAACCATGAAGAAACCAGGATGTCACACTTGATGAATAAATGCCGGACTTCGCTTGAACTTTTCTTCGCCATATGGTTTGTGATGGGAAATGTTTGGGTTTTTGACTCACGTTTTGGATCTTTTCATCAAGCTCCAAAACTCCATGTGCTCTGCATCACTCTTCTTGCTTGGAATGCAATGTGCTACTCCTTCCCTTTTCTACTGTTTGTGTTGCTATGCTGCTGTGTGCCACTGATTAGCACCCTCCTTGGCTACAACATGAACATAGCCTCTTTTGATAAAGGTGCTTCTGATGATCAAATTTCGCAACTTCCAAGTTGGAGACATAAACAAGACCGTGCCAAGTTAGAGATTGGAAATGACTCTGAAGGGAGTGAAAAACTGATCGATGAAGACCAAGAATGCTGTATCTGCTTAGCCAAGTACAAAGACAAAGAAGAAGTTAGACAATTGCCCTGTTCCCATATGTTCCATCTGAAATGTGTGGATCAATGGCTAAAAATTACATCCTGTTGTCCTCTTTGCAAACAAGGATTAGAGAGGGTGGATAGGGAAGAGATGGAGGGAAATATGGAGAAAAAGGGCAGTTTCATCAAAGTAATGCAGTTGGATGGTACACAAATAGAAATCCCAGCTTTGAATATGGATGTTATAAAGAACCAGTCAAATAAGGTTGCGTCAGAACCAGTAACAAGTGAAGCTATGTTGAAGAAATCTTCTAGTGAGAGGAAGAATTGCCTGTGCTCACCCACCACGCATGTTGGATCCTTCAGGTGTCGCCACCATCGTTCTGGAATGGGCCGTCCAAGCTCTATTGGCTCCAATCTCGCTGCATTGGACTCTAAATCCTCACCCTAA 1287 0.4312 MVPFSSNSATEDRAASARNRPPRVTPPSFLVRVAMRISRARWFTFLRRVFHYQNGSRSNLGSNPFNSSTWMMLEFIALIVQITITTFTLAIAKRERPIWPMRIWISGYDIGVVLNLLLLYGRYRQIYLTRGDALDLSDIEQQTNHEETRMSHLMNKCRTSLELFFAIWFVMGNVWVFDSRFGSFHQAPKLHVLCITLLAWNAMCYSFPFLLFVLLCCCVPLISTLLGYNMNIASFDKGASDDQISQLPSWRHKQDRAKLEIGNDSEGSEKLIDEDQECCICLAKYKDKEEVRQLPCSHMFHLKCVDQWLKITSCCPLCKQGLERVDREEMEGNMEKKGSFIKVMQLDGTQIEIPALNMDVIKNQSNKVASEPVTSEAMLKKSSSERKNCLCSPTTHVGSFRCRHHRSGMGRPSSIGSNLAALDSKSSP 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g01001 428 MobiDBLite consensus disorder prediction 1 21 - -
Spst8g01001 428 MobiDBLite consensus disorder prediction 402 428 - -
Spst8g01001 428 Pfam Ring finger domain 277 319 IPR001841 -
Spst8g01001 428 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 228 324 IPR013083 -
Spst8g01001 428 SMART ring_2 278 318 IPR001841 -
Spst8g01001 428 ProSiteProfiles Zinc finger RING-type profile. 278 319 IPR001841 -
Spst8g01001 428 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 13 321 - -
Spst8g01001 428 SUPERFAMILY RING/U-box 269 323 - -
Spst8g01001 428 MobiDBLite consensus disorder prediction 411 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g01001 Spst-Chr8 8697891 8701824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g01001 21 322 C3H Transcription Factor Family AT4G26580 68.750 5.88e-148 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g01001 - - gmx:100813670 615.15