Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00980 ATGGCTGAGTCGGACAACGACTCGGGGGGAGCGCACAACGCGGGGAACAGCGGCTTCAGCGAGTTGTCGCCCCGGGAACAGGACCGCTTCCTTCCAATCGCCAACGTAAGCAGGATCATGAAAAAGGCTCTGCCGGCGAACGCCAAGATCTCTAAAGACGCCAAAGAAACCGTACAAGAATGCGTTTCGGAGTTCATAAGTTTCATAACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACAATCAACGGCGACGACCTCCTGTGGGCCATGACCACCTTGGGATTCGAGGACTACGTCGACCCTCTCAAGATTTACCTCCAGCGATTCCGCGAGATCGAGGGAGAGAAGACCGTGGCCGCGCGCGACAAAGACGCCGCCGCCGCCTCTGCCTCCGCCTCCGCCACCGCCGCCGCTCTCAGCGGCTACGACTACTCCTCATCCACCGCCGCCGCCATGATGCATCATCAGGGACACGTGTACGCCTCCCCCCCTTTCCATCAAGTGAGTGCCGCTCCTATTATGGGTAAGCCTGGGCCTGGGTCTGGGCCCGGACCCACTTATCCTGCCCCTGGTAGACCCAGATAG 597 0.6097 MAESDNDSGGAHNAGNSGFSELSPREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVDPLKIYLQRFREIEGEKTVAARDKDAAAASASASATAAALSGYDYSSSTAAAMMHHQGHVYASPPFHQVSAAPIMGKPGPGSGPGPTYPAPGRPR 198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00980 198 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 142 IPR027113 GO:0001228|GO:0006355|GO:0016602
Spst8g00980 198 MobiDBLite consensus disorder prediction 9 23 - -
Spst8g00980 198 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 30 94 IPR003958 -
Spst8g00980 198 MobiDBLite consensus disorder prediction 182 198 - -
Spst8g00980 198 SUPERFAMILY Histone-fold 27 133 IPR009072 GO:0046982
Spst8g00980 198 PRINTS CCAAT-binding transcription factor subunit A signature 77 95 - -
Spst8g00980 198 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Spst8g00980 198 PRINTS CCAAT-binding transcription factor subunit A signature 58 76 - -
Spst8g00980 198 ProSitePatterns NF-YB/HAP3 subunit signature. 61 77 IPR003956 GO:0005634|GO:0006355|GO:0043565
Spst8g00980 198 Gene3D Histone, subunit A 19 152 IPR009072 GO:0046982
Spst8g00980 198 FunFam Nuclear transcription factor Y subunit B-3 19 142 - -
Spst8g00980 198 MobiDBLite consensus disorder prediction 1 25 - -
Spst8g00980 198 MobiDBLite consensus disorder prediction 174 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00980 Spst-Chr8 8543573 8544169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00980 1 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 84.677 2.93e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst8g00980 CBFD_NFYB_HMF 1.8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00980 K08065 - gmx:100500556 266.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00980 8 8543573 8544169 Spst8g00980 8 8543573 8544169 ECH