Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00957 ATGTTAACTATCATGTTATCTCTTTTCTCACCCTTTTCCCGCATACACATTTCCAACGATGTTCTCCTCACCCCAGTTTTCCTTCATGGCTTATCCGCCTTCCTCCACCTACTATTGCTCGTCGCGGTTTCACTGTCATGGGTTTGGAACAAATTAACAACACGAGTCAGCGATGGGTCTAAGGAGAAACACGACAACACCCTCTTCAAAACGACCGTGTTTTGTTCTCTGGCTGCTTCTGTTTTCAGTTTTCTCCTCTGTTTGTTCAATTACTTCTATTGGTACTCTAGTGGCTGGTCAGAGGAAAAGCTCGTGACCCTTTTAGATTTGGCGCTCAAAACAGTTGCGTGGGGCGTCATTTGTGTTTGCTTACACAAGGGGTCCTTCAGTTCTGGCGAAAGAAGGTTTTCATTCCTCTTCCAAGCTTGGTGCGTCTTCTACCTCATTGCCTCTTGCTATGGCTTCGTGGTTGACATAGTTGTCATATCGGAGAGACGCGTTGCTTTGCCGACTCAGTACTTGGTTTCTGATGTGGTTTCCACTTGTGTTGGTTTGATATTCTGTTACGTGGGGTATTTTGTGAAAAACAAAGGCCATGTTCGAGAAAAAGAAAATAATGGTATTCAGGAACCTCTTTTGAATGGCTCCACAAATGATGGGGATGCCTTGATATCGGAAGAGACCAAGGGTGGGGACACTGTTACCCCGTTCGCATATGCTGGCATTTTGAGCCTTCTTACATTCTCTTGGGTGGGTCCTCTTATCGCTGTTGGCAATAAGAAGACGCTAGACCTTGAGGATGTTCCACAACTAGAAAGCGCAGACAGTGTAGTTGGTGCTTTTCCAAGTTTCAGAGGTAAACTTGAGGCTGATAGTGGCACAATAAATAGTGTCACCACACTTAAGTTGGTGAAGTCGTTACTGATGTCAGCGTGGAAGGAGATTCTTTTCACGGCTTTTCTTGCATTGTTAAACACTTTGGCTTCTTATGTTGGTCCTTACCTTATTGACGGTTTTGTTCAGTACCTTGATGGACAAAGGCTGTATGAAAACCAGGGCTATGTTTTGGTTTCTGCGTTTTTCTTTGCAAAGCTTGTAGAGTGTCTGACCCAAAGGCATTGGTTCTTTAGGTTGCAGCAAGTTGGACTTCGAATTCGTGCACTGCTTGTCACGATGATCTATAACAAGGCTCTGACCCTATCTTGTCAGTCAAAGCAGGGTCACACATCTGGAGAAATAATTAATTTCATGACTGTTGACGCTGAAAGAGTTGGTGTGTTCAGTTGGTATATGCATGATTTGTGGATGGTGGCTTTGCAAGTTACATTGGCCTTATTGATTCTGTATAAAAACCTTGGACTCGCTTCAATTGCTGCTTTTGTTGCAACTATTGTTGTTATGCTGGCAAATGTTCCCTTGGGTTCATTGCAAGAGAAATATCAAAAGAAGTTGATGGAGTCGAAAGATACAAGAATGAAGACCACATCTGAGATTTTAAGGAATATGAAGATTCTCAAACTGCAAGGATGGGAAATGAAGTTTCTGTCAAAAATAACTGAGCTCAGGAAAACTGAGCAAGCCTGGTTAAAAAAATTTGTCTATACTGCAGCCATGACCACGTTTGTGTTTTGGGGTGCCCCCACATTTGTATCTGTGGTTACTTTTGGTACTTGTATGCTTGTAGGGATCCCCCTTGAAACAGGGAAGATTCTGTCTGCACTTGCAACATTCCGAATTCTTCAGGAGCCGATTTATAGTCTTCCAGATACAATTTCAATGATAGCACAAACTAAAGTGTCTCTTGATAGGATTGCATCATTCCTTCGTCTGGATGACTTACCCTCTGATGTTGTAGAGAAGCTTCCCCGCGGTAGTTCTGATACAGCAATTGAAGTTGTTGATGGAAACTTTTCCTGGGAATTATCTTCCCCTAACCCAACATTGCAAAACATAAATCTTAAAGTTTTTCATGGGATGAGGGTTGCAGTTTGTGGTACTGTTGGATCAGGCAAATCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCTAAGATATCAGGCCTCCTTAAGCTTTGTGGAACGAAGGCCTATGTTACTCAATCTCCATGGATACAGAGTGGTAAGATAGAGGAGAATATATTGTTTGGAAAACAAATGGATAGGGAAAAGTATGAGAAGGTACTTGAGGCCTGTTCCCTGAAGAAAGATCTTGAGATTCTGTCGTTTGGTGATCAGACAATTATAGGAGAGCGTGGAATAAATTTGAGTGGTGGACAAAAACAAAGAATACAGATTGCACGTGCACTTTACCAAGATGCTGATATATATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCACACAGGCTCTCACCTTTTTAAGGAATGTTTGCTGGGCCTTTTAAGTTCAAAGACAGTAGTTTATGTCACTCATCAAGTAGAGTTCTTACCTGCTGCTGATCTTATATTGGTCATGAAAGATGGGAAAATTACTCAAAGTGGAAAGTATGCTGATCTGCTTGAGAGTGGAGCTGATTTTATGGAACTTGTTGGCGCACACAAAAAAGCTTTGTCGACACTGGATTCATTAGATGGATCAACAATGTCTAATGAAATAAGCACCTTAGAACATGATGTAAATGTCTCTGGCCCGCAAGGTTTTAAAGAGGAGGAGGCAATTGAAGATGAACAAAATGGTAAAACAGACAACAAAAGTGAACGCAACGGCCAACTTGTTCAGGAAGAAGAAAGGGAGAAAGGTAGAGTTGGGTTTTCAGTGTATTGGAAATGTATCACAACAGCATATGGAGGAGCTCTTGTACCATTCATATTGTTGGCTCAGATTCTTTTTCAAGCTCTTCAAATCGGAAGTAATTATTGGATGGCTTGGGCGACTCCTATCTCAACTGATGTGGAACCACCTGTTAATGGAACAACTCTTATTGTAGTTTATGTTAGTTTGGCCATTGGAAGTTCTTTATGCATCCTTGCCAGAGCAATGCTTCTTGTCACAGCTGGTTACAAGACAGCTACTATACTCTTCAATAAAATGCACTTTTGTATTTTTCGTGCTCCAATGTCATTTTTCGATTCCACTCCAAGTGGGCGAATCCTAAATAGAGCTTCAACAGATCAAAGTGCTTTGGATACAGACATTCCTTATCAAATTGCATCATTTGCCTTCATTATGATCCAACTTTTTGCAATTATAGCAGTGATGTCTCAGGCTGCATGGCAAGTTTTTGTTGTCTTCATACCTGTGATCATAGTCAGCATCTGGTATCAGCAATATTATATTCCATCAGCCCGAGAACTATCTCGTTTAGTTGGAGTGTGCAAAGCCCCAATCATTCAACACTTCTCTGAAACAATTTCTGGTGCTTCAACCATTAGAAGCTTTGATCAGCAATCAAGATTTCAGGAAACAAATATGAAACTGACTGATGGGTATTCTCGGCCAAAGTTCAATATTGCTGGTGCCATGGAATGGTTGTGCTTCCGCTTAGATATGTTGTCTTCTATCACATTTGCCTTTTCCTTAATATTCTTAATATCTATTCCACCGGGTTTCATAGATCCAGGCCTTGCTGGTTTAGCGGTTACATATGGACTAAATTTGAACATGATACAAGCTTGGATGATATGGAATCTCTGCAATATGGAGAACAAAATTATATCAGTAGAAAGAATACTTCAGTATACTTGTATTCCCAGTGAACCTCCTCTTGTTGTAGATGAAAATCGGCCAGATCCTTCTTGGCCCTCTATTGGGGAGGTTGATATACAAGATTTGCAGGTTCGTTATGCTCCACATCTTCCACTTGTGTTGTGTGGTCTTACCTGCAAATTTCATGGAGGACTGAAAACTGGCATTGTTGGGAGAACAGGAAGTGGTAAATCCACTCTCATACAAACGCTTTTCCGAATTATTGAGCCTGCTGTTGGGAAAGTTATGATTGACAACATCAACATCTCTTCAATTGGACTTCATGATTTGAGGTCTAGACTTAGCATTATTCCTCAGGATCCAACAATGTTTGAAGGCACAATAAGAAATAATCTGGACCCCCTTGAAGAATACACTGACGAACAAATTTGGGAGGCCTTGGATAAGTGTCAACTTGGAGACGAAGTTAGAAAGAAAGAAGGAAAGCTTGACTCCAAAGTTAGTGAGAATGGTGAGAATTGGAGTATGGGTCAGAGACAGTTGGTCTGCCTTGGCAGGGTGCTGCTTAAGAAAAGCAAGGTATTGGTTCTTGACGAAGCCACTGCATCAGTGGATACAGCTACGGATAATTTGATTCAGCAAACTCTTAGGCAACATTTCACTGACTCTACAGTTATTACAATTGCACATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTGCTTCTTAGTCAAGGACTTATTGAGGAGTATGACTCCCCAAAAAGGTTGCTAGAGAACAAGTCATCATCTTTTGCTCAACTTGTTGCTGAGTATACCGTGAGGTCCAACTCCAGTTTTGGGATATCTGATGGTCACTAA 4533 0.4121 MLTIMLSLFSPFSRIHISNDVLLTPVFLHGLSAFLHLLLLVAVSLSWVWNKLTTRVSDGSKEKHDNTLFKTTVFCSLAASVFSFLLCLFNYFYWYSSGWSEEKLVTLLDLALKTVAWGVICVCLHKGSFSSGERRFSFLFQAWCVFYLIASCYGFVVDIVVISERRVALPTQYLVSDVVSTCVGLIFCYVGYFVKNKGHVREKENNGIQEPLLNGSTNDGDALISEETKGGDTVTPFAYAGILSLLTFSWVGPLIAVGNKKTLDLEDVPQLESADSVVGAFPSFRGKLEADSGTINSVTTLKLVKSLLMSAWKEILFTAFLALLNTLASYVGPYLIDGFVQYLDGQRLYENQGYVLVSAFFFAKLVECLTQRHWFFRLQQVGLRIRALLVTMIYNKALTLSCQSKQGHTSGEIINFMTVDAERVGVFSWYMHDLWMVALQVTLALLILYKNLGLASIAAFVATIVVMLANVPLGSLQEKYQKKLMESKDTRMKTTSEILRNMKILKLQGWEMKFLSKITELRKTEQAWLKKFVYTAAMTTFVFWGAPTFVSVVTFGTCMLVGIPLETGKILSALATFRILQEPIYSLPDTISMIAQTKVSLDRIASFLRLDDLPSDVVEKLPRGSSDTAIEVVDGNFSWELSSPNPTLQNINLKVFHGMRVAVCGTVGSGKSTLLSCVLGEVPKISGLLKLCGTKAYVTQSPWIQSGKIEENILFGKQMDREKYEKVLEACSLKKDLEILSFGDQTIIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGKITQSGKYADLLESGADFMELVGAHKKALSTLDSLDGSTMSNEISTLEHDVNVSGPQGFKEEEAIEDEQNGKTDNKSERNGQLVQEEEREKGRVGFSVYWKCITTAYGGALVPFILLAQILFQALQIGSNYWMAWATPISTDVEPPVNGTTLIVVYVSLAIGSSLCILARAMLLVTAGYKTATILFNKMHFCIFRAPMSFFDSTPSGRILNRASTDQSALDTDIPYQIASFAFIMIQLFAIIAVMSQAAWQVFVVFIPVIIVSIWYQQYYIPSARELSRLVGVCKAPIIQHFSETISGASTIRSFDQQSRFQETNMKLTDGYSRPKFNIAGAMEWLCFRLDMLSSITFAFSLIFLISIPPGFIDPGLAGLAVTYGLNLNMIQAWMIWNLCNMENKIISVERILQYTCIPSEPPLVVDENRPDPSWPSIGEVDIQDLQVRYAPHLPLVLCGLTCKFHGGLKTGIVGRTGSGKSTLIQTLFRIIEPAVGKVMIDNINISSIGLHDLRSRLSIIPQDPTMFEGTIRNNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSKVSENGENWSMGQRQLVCLGRVLLKKSKVLVLDEATASVDTATDNLIQQTLRQHFTDSTVITIAHRITSVLDSDMVLLLSQGLIEEYDSPKRLLENKSSSFAQLVAEYTVRSNSSFGISDGH 1510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00957 1510 Pfam ABC transporter 1280 1425 IPR003439 GO:0005524
Spst8g00957 1510 CDD ABC_6TM_ABCC_D2 941 1235 IPR044726 GO:0140359
Spst8g00957 1510 FunFam ABC transporter C family member 10 299 612 - -
Spst8g00957 1510 Pfam ABC transporter transmembrane region 316 583 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst8g00957 1510 Pfam ABC transporter transmembrane region 943 1184 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst8g00957 1510 SUPERFAMILY ABC transporter transmembrane region 306 616 IPR036640 GO:0005524|GO:0016020
Spst8g00957 1510 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 316 596 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst8g00957 1510 FunFam ABC transporter C family member 3 1243 1495 - -
Spst8g00957 1510 MobiDBLite consensus disorder prediction 893 915 - -
Spst8g00957 1510 FunFam ABC transporter C family member 5 904 1241 - -
Spst8g00957 1510 Gene3D ABC transporter type 1, transmembrane domain 902 1241 IPR036640 GO:0005524|GO:0016020
Spst8g00957 1510 Gene3D ABC transporter type 1, transmembrane domain 293 612 IPR036640 GO:0005524|GO:0016020
Spst8g00957 1510 Gene3D - 616 871 IPR027417 -
Spst8g00957 1510 SUPERFAMILY ABC transporter transmembrane region 942 1242 IPR036640 GO:0005524|GO:0016020
Spst8g00957 1510 Gene3D - 1243 1496 IPR027417 -
Spst8g00957 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 627 852 IPR027417 -
Spst8g00957 1510 CDD ABCC_MRP_domain2 1258 1478 - -
Spst8g00957 1510 Pfam ABC transporter 648 782 IPR003439 GO:0005524
Spst8g00957 1510 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1260 1494 IPR003439 GO:0005524
Spst8g00957 1510 CDD ABCC_MRP_domain1 630 830 - -
Spst8g00957 1510 CDD ABC_6TM_ABCC_D1 317 604 IPR044746 GO:0140359
Spst8g00957 1510 FunFam ABC transporter C family member 5 615 862 - -
Spst8g00957 1510 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 239 1494 - -
Spst8g00957 1510 SMART AAA_5 1286 1478 IPR003593 GO:0016887
Spst8g00957 1510 SMART AAA_5 657 830 IPR003593 GO:0016887
Spst8g00957 1510 ProSitePatterns ABC transporters family signature. 755 769 IPR017871 GO:0005524|GO:0016887
Spst8g00957 1510 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 943 1223 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst8g00957 1510 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1252 1491 IPR027417 -
Spst8g00957 1510 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 630 853 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00957 Spst-Chr8 8413929 8419560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00957 630 875 Calmodulin-binding Proteins AT2G36910 30.627 7.91e-24 107