Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00950 ATGTTCAATGAACCAGTTACTTTTCAAATGAAAATGTCTCAGAAACATAAAATGTCCTATAACTCTAACAGGTTCAGCATTGAGCCTGCACAAAATTTTGGGTCATGCTGCTTCCTGCAAAGTGAGAACCTAGACTACCACTCATCCTCTGATAACAGTGGCCATACAACCTACCCTTCTGTTCGTTCAGTAGAACATTATTGCACCCTGGAATCTTCTACAAAGATCAGTTTCCCTTCCCTAAATTCCCCATCAACTGTCAGTTTCTCATCTAACAATAGCCCAGTCTCAAAGCTACAGCCAAAACCATATGTGTTGAGTTCACAGAATTCTCTTGAAATTGCTAACGATTCACTAGAAAATGAATCTTGTTTGACGCATAGTGACAGCGAGCTGAGACACAAGATAAGAGAGCTCGAAAGTGTTATGTTGGGACATGATGCAGATATTCTGGATATGTATGATACTGCAATTCCAGAGGAATCTGATCCATTTTTGCTAGAGGCAGAAAGGTGGAAGAAAATGATGGAAATGATATCTAGAGGGGATTTGAAAGAGATGCTTTGTACATGTGCAATAGCTGTGGCAGAAAATGATATGGAGACAACTGAATGGTTGATGTCAGAGTTACGCAAACTGGTTTCCGTTTCGGGCAACCCAATCCAAAGATTGGGAGCATACATGCTGGAGGCTCTTGTTGCAAGAGTGGCCTCTTCAGGAAGCACAATCTACAAAGCCTTGAAATGTAAAGAGCCTACTGGTAGTGAACTCCTTTCACACATGCACCTACTTTATGAAATCTGCCCATATCTGAAATTTGGATACATGTCAGCAAATGGAGCTATTGCTGAAGTCATGAAGGGGGAAAGTGAAGTCCATATAATTGATTTTCAGATCAACCAGGGAATACAGTGGGTGAGCCTAATCCAAGCTCTTGCCGGCAGACCTGGAGGACCACCTAAGATCAGAATAACAGGTTTTGATGACTCCACTTCAGCTTATGCCAGGCAAGGAGGCCTTGAAATTGTGGGAGAAAGGTTGTTAACACTTGCACAATCATACGATGTATCCTTTGAGTTCCATGCCATAAAAGTTGCTCCCACTGATGTTGAAATTAAGGACCTTGAACTTCGACCTCGTGAAGCCATTGCTGTGAATTTTGCCATGATGCTGCACCATGTTCCCGATGAAAGTGTGGATAGTAAGAACCATCGTGACCGGTTGTTGAGATTGGCTAAGTGCCTGTCTCCAAAGATCGTGACACTAGTTGAGCAAGAATCACATACCAACAACCTCCCATTCTTCCCCCGTTTTGTTGAGACAGTGAACTACTACTTGGCTATTTTTGAATCAATTGATGCTGCTCTTCCAAGGGAGAACAAAGAAAGGATTAATGTGGAACAGCATTGTCTGGCTCGGGAAGTTGTGAACTTAGTAGCATGTGAAGGGGCGGAAAGAGTGGAACGTCACGAGCTTCTGAAGAAGTGGAGATCACGTTTCACTATGGCTGGTTTCTCACCATATCCATTGAACTCCTTTATAACTTGTTCGATTAAAAATCTTCAGCAAACTTACCAAGGACATTACACTCTAGAAGAGAGAGATGGGGCTCTATGTCTTGGTTGGATGAATCAAGTTCTTATTACCTCTTGTGCTTGGAGGTGA 1665 0.4246 MFNEPVTFQMKMSQKHKMSYNSNRFSIEPAQNFGSCCFLQSENLDYHSSSDNSGHTTYPSVRSVEHYCTLESSTKISFPSLNSPSTVSFSSNNSPVSKLQPKPYVLSSQNSLEIANDSLENESCLTHSDSELRHKIRELESVMLGHDADILDMYDTAIPEESDPFLLEAERWKKMMEMISRGDLKEMLCTCAIAVAENDMETTEWLMSELRKLVSVSGNPIQRLGAYMLEALVARVASSGSTIYKALKCKEPTGSELLSHMHLLYEICPYLKFGYMSANGAIAEVMKGESEVHIIDFQINQGIQWVSLIQALAGRPGGPPKIRITGFDDSTSAYARQGGLEIVGERLLTLAQSYDVSFEFHAIKVAPTDVEIKDLELRPREAIAVNFAMMLHHVPDESVDSKNHRDRLLRLAKCLSPKIVTLVEQESHTNNLPFFPRFVETVNYYLAIFESIDAALPRENKERINVEQHCLAREVVNLVACEGAERVERHELLKKWRSRFTMAGFSPYPLNSFITCSIKNLQQTYQGHYTLEERDGALCLGWMNQVLITSCAWR 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00950 554 ProSiteProfiles GRAS family profile. 175 554 IPR005202 -
Spst8g00950 554 Pfam GRAS domain family 185 554 IPR005202 -
Spst8g00950 554 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 129 548 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00950 Spst-Chr8 8376208 8377872 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00950 60 554 GRAS Transcription Factor Family AT1G50600 58.683 0.0 577
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Spst8g00950 GRAS 3.8e-132 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00950 - - gmx:100779977 951.044
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00950 8 8376208 8377872 Spst8g00950 8 8376208 8377872 ECH
Spst6g01947 6 19027846 19029447 Spst8g00950 8 8376208 8377872 PCT