Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00947 ATGGACGCCTCCGCCGCCACTTCCTCGGCCGAGCCCAGCCCGAGTTCGGAGCTCCGGCTCAACGGGGCATCCCAGGATCCGAATCGAACTGGGCCGGTTCAGAATTCGACGGCGAGGTACAAGCTAATTGCGCCGGCAAAGCTTCCGATCTCGAGGTCGCCGTGCATCACGATTCCTCCGGGACTGAGTCCGACGTCGTTCCTGGAATCGCCGGTTCTTCTTTCCAACATGAAGGTGGAGTCTTCACCAACTACAGGGTCCCTCCGCAATCTTCAACAAACAGCACATGGTTCTATGGCTTCTGCTGCCTCTGCTACATTTGCAGTAACCACTGCATGCTTCAATACCAATACTGTTGATGACAGGAAATCAAGCTTCTTTGAGTTCAAACCTCTCAACAGGTTGAATATGGTTCCTTCAGACTTCAATAACCATGTTTTCAAACAATCTACTCAAGTAGAAGGTCCAGGAAAATCTCAATCGTTTCCTTCCTCACCATTAGTTGAAAATGAAATAGCAGTCCCTTCTAACGAATTAAGTCTATCATCACCTGTACAAAAGGTTAATTCTAGTCCTAGTCCTCCTGTTGATGTTGATTTGGACGACATTAACCACAAAGGCAACACAGCTACTGGGCTTCAAGCATCGCATGTTGAGGTTAGAGGCAGTGGACTTTCAGTTGCAGCTGAGAAAACATCTGATGATGGATACAATTGGCGAAAATACGGGCAAAAACTTGTTAAAGGAAGTGAATTTCCACGCAGTTATTACAAATGTACACATCCAAACTGTGAAGTGAAAAAGCTTTTTGAACGCTCTCATGAAGGTCAAATCACTGAGATAATTTACAAGGGAACACATGATCATCCTAAACCTCAACCAAGCTGCCGATACTCTACTGGTACTATTATGTCTATTCAAGGAGAGAGATCTGATAAGGCTTCTTCTTTGGCTGGCCTAGATGACAAATCATCCACCATGTATGGTCAGGTGTCTCATGCTGCTGAGCCCAACAGTACTTCTGAGCCATCACCTGTGGCAACAAATGATGATGCTTTAGAGGGTGCTGGGTTTGTGTCAAACAGGATTAGTGAAGATGATGATGATGATCCCTTCTCAAAGCGAAGAAAAATGGAACTTGGAAATGTTGATATCACTCCTGTAGTTAAGCCTATCCGAGAGCCACGGGTTGTTGTACAAACTTTGAGTGAGGTTGATATATTGGATGATGGGTATCGCTGGCGTAAGTATGGCCAGAAGGTGGTGAGAGGCAATCCTAACCCAAGGAGTTATTACAAGTGCACAAATGCAGGTTGCCCTGTCAGAAAACATGTGGAAAGGGCATCTCATGATCCAAAAGCAGTGATAACCACATATGAGGGTAAACACAATCATGATGTACCAGCTGCAAGGAATAGCAGCCATGACATGGCAGTAGCAGCAGCTGGACAGACAAGGATTAAGTTGGAAGAAAGTGATACCATTAGCCTTGACCTTGGGATGGGCATTAGCTCAGCTTCTGAACATAGATCAAACGCACAAGGGAAAACATTGCACTCAGAATTTGGGGACACTCAAACTCACTCCAGTCATTCCAATTTCAAGTTTGTTCATACTACCTCAGCTCCAGTATACTTTGGTGTTCTAAATAACAGCTCTAATCCCTATGGTTCTAGAGACAACAGGAGTGAGGGTCCAGCTTTAAACCATTCCTCGTATCCTTGCTCCCAGAGCATGGGAAGAATACTAATGGGTCCATGA 1761 0.4537 MDASAATSSAEPSPSSELRLNGASQDPNRTGPVQNSTARYKLIAPAKLPISRSPCITIPPGLSPTSFLESPVLLSNMKVESSPTTGSLRNLQQTAHGSMASAASATFAVTTACFNTNTVDDRKSSFFEFKPLNRLNMVPSDFNNHVFKQSTQVEGPGKSQSFPSSPLVENEIAVPSNELSLSSPVQKVNSSPSPPVDVDLDDINHKGNTATGLQASHVEVRGSGLSVAAEKTSDDGYNWRKYGQKLVKGSEFPRSYYKCTHPNCEVKKLFERSHEGQITEIIYKGTHDHPKPQPSCRYSTGTIMSIQGERSDKASSLAGLDDKSSTMYGQVSHAAEPNSTSEPSPVATNDDALEGAGFVSNRISEDDDDDPFSKRRKMELGNVDITPVVKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHDVPAARNSSHDMAVAAAGQTRIKLEESDTISLDLGMGISSASEHRSNAQGKTLHSEFGDTQTHSSHSNFKFVHTTSAPVYFGVLNNSSNPYGSRDNRSEGPALNHSSYPCSQSMGRILMGP 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00947 586 MobiDBLite consensus disorder prediction 1 37 - -
Spst8g00947 586 Gene3D WRKY domain 225 293 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g00947 586 Gene3D WRKY domain 393 469 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g00947 586 FunFam WRKY transcription factor 33 395 461 - -
Spst8g00947 586 MobiDBLite consensus disorder prediction 507 530 - -
Spst8g00947 586 FunFam WRKY transcription factor 223 293 - -
Spst8g00947 586 SUPERFAMILY WRKY DNA-binding domain 400 468 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g00947 586 SMART WRKY_cls 233 291 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g00947 586 SMART WRKY_cls 408 467 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g00947 586 MobiDBLite consensus disorder prediction 556 578 - -
Spst8g00947 586 ProSiteProfiles WRKY domain profile. 403 468 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g00947 586 MobiDBLite consensus disorder prediction 556 586 - -
Spst8g00947 586 Pfam WRKY DNA -binding domain 409 465 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g00947 586 Pfam WRKY DNA -binding domain 234 290 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g00947 586 SUPERFAMILY WRKY DNA-binding domain 230 292 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g00947 586 ProSiteProfiles WRKY domain profile. 228 292 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g00947 586 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 70 509 IPR044810 GO:0003700
Spst8g00947 586 MobiDBLite consensus disorder prediction 309 352 - -
Spst8g00947 586 MobiDBLite consensus disorder prediction 309 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00947 Spst-Chr8 8366959 8372142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00947 43 586 WRKY Transcription Factor Family AT4G26640 53.455 5.69e-175 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst8g00947 WRKY 1.5e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00947 - - gmx:100816583 1036.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00947 8 8366959 8372142 Spst8g00947 8 8366959 8372142 ECH
Spst6g01948 6 19031555 19036413 Spst8g00947 8 8366959 8372142 PCT