LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst8g00928	ATGGAGACGGAGGAGGAGCTCGTCCCCGATCCCAAACCGGAGGTCCAGTCCTTGCCGCTGCAGAACGGGGACTCCGACGAGCGCTGCGCCAAGAAGCCCAAGGTGGACGCCGACGCCGAATTGAAGAGAGTGGCGGAGATTGTCCTCGTTCTCTCCACCATGGCCACGGTGCGTGCGGGGAGGAAGCCCTCTGACGCTGAGGTCGAGCTCATGAGAGAGGCGCGCTCCAAGCTCGCCAGCCTCTGCCAGGGTTTGGCTCCCAAGGATATCGTAGCCAGGGAAGCAATTGGCACCGTCATCGAGGATCTTGGATTGCACTCCAAGCTTAAGGACCAGAGGCTAGGGTTTCGAACTCCCAAGATGTCCATTGCCGAGAGGTATTCCCATGCTAAGTGGAAGATGGAGGAAGCAAAGAAGTTTTCTGCACCTTCTACACCTCCCACAGCGCATACATCTCAGCCCTTGCAAGCAAATGTTGGTGGACCTGTTGACAATCGTGTGCCATCACATGTTCGAATTTTTCCTTCTGATAAATCAAGCCAGCCAACAATCCCTTCTATGGGTACCGTAGTGTCTATTCCTCCCCATGTCTCTGCTGGATCTTCTGCAGTATTGCAATACCAATCAACAGGAAATGAAGTAAGACCACCAGTGGTTCCTGGTGCGGTGCCTAGTGGACACTTGGGGAGAAATTCATCTTCCATAGTATTGCCTAAAGTTGAACATCCACAGTTCAAAGTTGATGGAGTATCAAATGGGTCTTATATGCTACAAGTCCAAGCAAACTCATCAGTGAACCAACCTCTGGTGAATGCTCCAACATGGTCTATACAGACCCAAGCTGCTTCATTAGCAAGAACTGCTTCAGAAAACAAGTTGCCTGTCAAGGTTGAAGCAACATCTGACGTAACTGTATCAAGGGCAGGGCCTCAAATGACAACAGACCAGAGCTTTAGACCATTTATCACTCAAACGGCTCCTGTAAATTTGCCTAGTGTGGTCCAGCCATTGCAGACCACAAACATTGTTCAGCCTCCTCTTATTCCTAGTCACACTGATATTGCAAAGGTTGTTCAGAAAGTGTTACAACCAAAGCATCCCAGCCATCCCACTTGGATTCCTCCATCAAGGGATTATATGAATAAGGCTTTGACATGTCAGATGTGTGAGCTCAGTGTTCATGAGGTTGATACTGTACTTCTCTGTGATGCTTGTGAAAAGGGATTTCACTTGAAGTGCCTGCAGCCCTCAGTTTTGAGAGGAATTCATAACAGAGTTGATTGGCACTGTATGAGGTGCTTGAGTTTAAGTGGTGGAAAGCCTTTGCCTCCAAAATATGGTCGTGTCATGAGATCCTCAAACACACCGCCAAAATTGCCTTCTAATACTGGTGGTATTCAACCATATTCTGAGAAGAAAGCAGAGAACATAGAACCAAATGTCCTGCAGACAGTAACGACGAATGGGAGCACTGTTCCAACTGTTGCCAGCCGCAATCACAATGTTGAACTGCAGTGTGACTCAAAGGTCCCTGATACCAAAGGTATTCAAGGGATTGGCATTTCCTCCAGCATTGAAGCTATTGATAAAAAGCCTGATCCAAACAATTTTACAAAATCTCCTAGTGCAGCTTCTAGTCCTTCCACTGGGTTGCTAGGTGAATGCTCTGCTCAACAAATAAATTCTAAGGTTTTGATCAGTAAAGAGAATTCAGAATGTGAGTCTCTTCCTCAATTATCTGAGCTGGCCAAATGTGAAAGTTTGCATTCATCTCAAGATTTTCAAGTTGAACAGACAATGTTAAAAGACAATGCTGAAGTATCATCAGATAAACACATTGATGGTAATATTATGAATAATAATCAGAAGGAATCTCTTGGAGGAGAAAATTTAAGTTACGATATCAAGCGTGATGACCAAGATTCTGCACTTGCAAACTTTGTGGGAATTGCTGGAACTAATACTGAAGGTAGACAGCACCCTGCATTATCTTCAGATAGTTCACATGCTGTAGAATGGATTGGTGATATAGTACAACTTGTAGATGAGAAAAAGTTTTATCAATCTTGCTATGTTGATGGAGTAATGTATAGGCTGCAGGGTCATGCACTTTTCCCCACCAGCTATGGCAAACTAACCCCTGCTAAACTCCAGTCTATGTGGGAAGATTGCCAAACTGGGTTAAAGTGGGTTAAGGTGACAAAGTGCTACTTTCCTGATGATTTGCCAGGGAATATTGGTCATCCATGTATATCTGAAGTCAATGAGGTTTATGAATCTAATAGTGATAGAACTGAAATGGCTAGCTCTATTCGAGGCCCATGTGAAGTCCTCCCATCTGATAAATTTAAACAAGAAAATGACAGACGATGTCAGTTAGGAATTGTGGAAAGTTCTAGAATACAGCCCATTTTCCTTTGCAGGAAGTCTAAAACTGCCGCAAAATGTGAGAAGAGAGATGGGCAGCCTGGATGTCTCTGGTGGGCCAGATATGGGATGTCTTTTGAAAAACCTGCTGAAAGGGGGGGGGGGGGTGATAGGACCTCAAAAATGGCACCCTATGGTGTGCCTGGAGCAGCCTGCTCTGTAAGAAGAGGTAGTGTCTTCTCTGGTGGGGGGGAGATTTGCAACAATCGCACAATTGTGCCACTATACCGGCTATTTAGAGACACCGGATGTGACTTTGGTGCCCAGTGGCTCTCTGTGCTGCCATTGCACACTAGTAATTACCTTGGTGGTTTTATGACGAATTCAAAAAGTTATTTCAACCTGGATGTTAGGGAAGAAAAGCATCCCAAAGAAACAAAGTGGCATGAACATTTTGAGTTGGAGCTTAGGGACAAGAGTGAGATGCAGAAGGAGCTGAAAAAGGAGGAGGGGGCCATTAGAGGAAAGTCAGATGAGAAAGATTCCAAGTTTTTGGATTCAGAGGGCGGTAGGTCTCATAGTGCCTTAGAAATTCTGATATATATTGATGCCTTTTTCACCACCTTTTGGGGCGTGTTGTGA	3009	0.4533	METEEELVPDPKPEVQSLPLQNGDSDERCAKKPKVDADAELKRVAEIVLVLSTMATVRAGRKPSDAEVELMREARSKLASLCQGLAPKDIVAREAIGTVIEDLGLHSKLKDQRLGFRTPKMSIAERYSHAKWKMEEAKKFSAPSTPPTAHTSQPLQANVGGPVDNRVPSHVRIFPSDKSSQPTIPSMGTVVSIPPHVSAGSSAVLQYQSTGNEVRPPVVPGAVPSGHLGRNSSSIVLPKVEHPQFKVDGVSNGSYMLQVQANSSVNQPLVNAPTWSIQTQAASLARTASENKLPVKVEATSDVTVSRAGPQMTTDQSFRPFITQTAPVNLPSVVQPLQTTNIVQPPLIPSHTDIAKVVQKVLQPKHPSHPTWIPPSRDYMNKALTCQMCELSVHEVDTVLLCDACEKGFHLKCLQPSVLRGIHNRVDWHCMRCLSLSGGKPLPPKYGRVMRSSNTPPKLPSNTGGIQPYSEKKAENIEPNVLQTVTTNGSTVPTVASRNHNVELQCDSKVPDTKGIQGIGISSSIEAIDKKPDPNNFTKSPSAASSPSTGLLGECSAQQINSKVLISKENSECESLPQLSELAKCESLHSSQDFQVEQTMLKDNAEVSSDKHIDGNIMNNNQKESLGGENLSYDIKRDDQDSALANFVGIAGTNTEGRQHPALSSDSSHAVEWIGDIVQLVDEKKFYQSCYVDGVMYRLQGHALFPTSYGKLTPAKLQSMWEDCQTGLKWVKVTKCYFPDDLPGNIGHPCISEVNEVYESNSDRTEMASSIRGPCEVLPSDKFKQENDRRCQLGIVESSRIQPIFLCRKSKTAAKCEKRDGQPGCLWWARYGMSFEKPAERGGGGDRTSKMAPYGVPGAACSVRRGSVFSGGGEICNNRTIVPLYRLFRDTGCDFGAQWLSVLPLHTSNYLGGFMTNSKSYFNLDVREEKHPKETKWHEHFELELRDKSEMQKELKKEEGAIRGKSDEKDSKFLDSEGGRSHSALEILIYIDAFFTTFWGVL	1002

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst8g00928	1002	Coils	Coil	938	968	-	-
	Spst8g00928	1002	CDD	BAH	694	808	-	-
	Spst8g00928	1002	Gene3D	-	297	435	-	-
	Spst8g00928	1002	PANTHER	RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN	23	817	-	-
	Spst8g00928	1002	ProSiteProfiles	Zinc finger PHD-type profile.	383	436	IPR019787	-
	Spst8g00928	1002	MobiDBLite	consensus disorder prediction	144	159	-	-
	Spst8g00928	1002	MobiDBLite	consensus disorder prediction	1	34	-	-
	Spst8g00928	1002	MobiDBLite	consensus disorder prediction	954	978	-	-
	Spst8g00928	1002	MobiDBLite	consensus disorder prediction	535	551	-	-
	Spst8g00928	1002	SMART	PHD_3	385	434	IPR001965	-
	Spst8g00928	1002	MobiDBLite	consensus disorder prediction	141	162	-	-
	Spst8g00928	1002	CDD	PHD_SF	385	433	-	-
	Spst8g00928	1002	ProSiteProfiles	BAH domain profile.	695	822	IPR001025	GO:0003682
	Spst8g00928	1002	ProSitePatterns	Zinc finger PHD-type signature.	386	433	IPR019786	-
	Spst8g00928	1002	MobiDBLite	consensus disorder prediction	527	551	-	-
	Spst8g00928	1002	Pfam	PHD-finger	386	434	IPR019787	-
	Spst8g00928	1002	SUPERFAMILY	FYVE/PHD zinc finger	376	441	IPR011011	-
	Spst8g00928	1002	Gene3D	-	664	824	IPR043151	-

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	PHD	Spst8g00928		PHD	2e-07	CL0390

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst8g00928	-		-	gmx:100807139	1344.72

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst8g00928	8	8218421	8230774	Spst8g00928	8	8218421	8230774	ECH