Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00906 ATGCGGAAGGGAAGAGGAGGGGCCGCGTCGGTGGTCACGGCGGCGGCTGCGGCAGCCAACGGACCTGTTTTAAAGGAGCCTCGGTACCGGGGCGTGAGGAAGAGACCGTGGGGGAGGTTCGCGGCGGAGATCAGAGACCCGTTGAAGAAAGCGAGGGTTTGGTTGGGAACCTTCGATTCTGCTGAGGAAGCTGCCCGAGCCTACGACGCCGCCGCTCGGACTCTTCGAGGACCCAAGGCCAAAACAAATTTTCCCCTCTCACACCCTTTTTGCTATCCGCACCCCACCACTGATCCTTTCTACTATGCGGGTTTCCACGACAACAACCACAACAACCTTAACAACCCTCAGAGACCCACCTCAAGTGGCATGAGTAGCACCGTTGAGTCCTTCAGTGGGCCCCGCCCTCCCACTGCCGCCACTACTGCGGCTCCTTTTTTGACCGCTAAGCGGAGATACCCGCGCACTCCCCCTCTCGTCCCCGAAGACTGCCACAGCGACTGTGACTCCTCCTCCTCCGTCGTTGATGATGGCGATAACATCGTCTCCTCGTCGTTCCGCCCTCCGCTGCCCTTTGATCTCAACGCGCCGGCGTTCGACGACACCGCCGATGACGACCTGCGCTGCACCGCGCTTTGCCTCTGA 645 0.6093 MRKGRGGAASVVTAAAAAANGPVLKEPRYRGVRKRPWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDAAARTLRGPKAKTNFPLSHPFCYPHPTTDPFYYAGFHDNNHNNLNNPQRPTSSGMSSTVESFSGPRPPTAATTAAPFLTAKRRYPRTPPLVPEDCHSDCDSSSSVVDDGDNIVSSSFRPPLPFDLNAPAFDDTADDDLRCTALCL 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00906 214 MobiDBLite consensus disorder prediction 112 141 - -
Spst8g00906 214 CDD AP2 27 87 IPR001471 GO:0003700|GO:0006355
Spst8g00906 214 SMART rav1_2 28 91 IPR001471 GO:0003700|GO:0006355
Spst8g00906 214 SUPERFAMILY DNA-binding domain 28 87 IPR016177 GO:0003677
Spst8g00906 214 Gene3D AP2/ERF domain 28 87 IPR036955 GO:0003700|GO:0006355
Spst8g00906 214 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 22 180 - -
Spst8g00906 214 Pfam AP2 domain 27 77 IPR001471 GO:0003700|GO:0006355
Spst8g00906 214 ProSiteProfiles AP2/ERF domain profile. 28 85 IPR001471 GO:0003700|GO:0006355
Spst8g00906 214 MobiDBLite consensus disorder prediction 112 137 - -
Spst8g00906 214 FunFam Ethylene-responsive transcription factor 2 28 86 - -
Spst8g00906 214 PRINTS Ethylene responsive element binding protein signature 51 67 IPR001471 GO:0003700|GO:0006355
Spst8g00906 214 PRINTS Ethylene responsive element binding protein signature 29 40 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00906 Spst-Chr8 7996994 7997638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00906 1 214 AP2-EREBP Transcription Factor Family AT1G50640 59.052 2.75e-54 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst8g00906 AP2 1.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00906 K09286 - gmx:100803943 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00906 8 7996994 7997638 Spst8g00906 8 7996994 7997638 ECH
Spst6g01997 6 19725940 19726563 Spst8g00906 8 7996994 7997638 PCT