Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00900 ATGGAACCCACCTGGAATGATGCCATTGCCAAGCCTAATTCCTCATACCCTGTCATGTCCTTTAGGGGGACACCACTTCTCATGGATGCTCTTGATTTCTTCCCTGAGAAGAGTAAGGAGACTGAAGATGATGATGATATTGATCATCATCAAAGTGTCAAGTTTCATGTAGATACCAGTTTGGATCTCCTTACAAAAAATACTGGTGGCAACAGATCAATGGAAGAAAATGATGCATTGGAAACTATGGATGAAAAGAGTAAGTTTGTAGCTTTGGTAGCTGAATTGCACCAAATGAATGCTGAAAATCAAAGATTAAGAGATTTGGTTGATCAGATGAACAATAACTGCGATGCCCTACGCATGCAACTTATCAATCTAACTCAGAAGCAGCATAACCATGCGAACAATGCAGAGAAAGAAGACATGGTTCCAAGGTCATTTTTAGACATGGCTGTCGCTGAAAAGGAAGAGGCTTCCCAGCAATCCTCGGAGGAAAAACTCAGAGAAGGCAAAAGCATGGTTGATTTGATGCATCAGCGTAAGAGTAATGGCAAAGACATTGAAGATAAGTTGGATCGTGGAAGGGAAAGTTCAAAAGCTAGAATGGAAAGTGACCAAGAAATTTCCAACAAAGATCCTAGAATGGATCAAACTTCAGAAACTTTGTCAATGATTAAGAAAGCTCGTGTGTCAGTTCGAGCAAGATCCGACTCTACAATGATTGCAGATGGATGCCAATGGCGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCTTGTCCAAGGGCCTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTGCGCAAGCAGGTACAAAGGTGTGCTGAAGATAGAAGTGTGCTGATAACAACATATGAAGGGCAGCATAACCATCCACTCCCTCCCACAGCCCAGGCAATGGCCTCCACCACATCTGCAGCAGCCTCAATGCTTCTTTCTGGATCAATGCCAAGCTCAGATGGCCTAATCAATCCAACCATACTGGAAACTGCTTCACTTCCATGCTCTCAAAACATGGCAACTCTCTCTGCCTCAGCCCCATTTCCCACCATCACACTGGATCTCACTCAAAATGCATCCAACTCCTCAAAGCTTCAAAGGGAACCACACAACCAAATGGGCCTCCTATCTCCCCTTTTGGCTCACAATAAGTTTATGTCAGTTCCAAAAATATTTGGACAGTCACTTTGTGATCAAACTAAGATTGCTGGTTTACATGAGTCTCAGGGAAAGGACACAGCTCCATCATTTGCTAACTCATTGAATGCAGCTACTGCTGCTATCACAGCAGACCCCAATTTCACTGCAGCTCTTGTGGCAGCAATAACATCTGTCATGGGGAATTCACATTCAAGTACAAGTGGCACCAATAATACCAGTGGAGATGAGCAATGCAATAATAATGCATAA 1437 0.4328 MEPTWNDAIAKPNSSYPVMSFRGTPLLMDALDFFPEKSKETEDDDDIDHHQSVKFHVDTSLDLLTKNTGGNRSMEENDALETMDEKSKFVALVAELHQMNAENQRLRDLVDQMNNNCDALRMQLINLTQKQHNHANNAEKEDMVPRSFLDMAVAEKEEASQQSSEEKLREGKSMVDLMHQRKSNGKDIEDKLDRGRESSKARMESDQEISNKDPRMDQTSETLSMIKKARVSVRARSDSTMIADGCQWRKYGQKMAKGNPCPRAYYRCTMSTGCPVRKQVQRCAEDRSVLITTYEGQHNHPLPPTAQAMASTTSAAASMLLSGSMPSSDGLINPTILETASLPCSQNMATLSASAPFPTITLDLTQNASNSSKLQREPHNQMGLLSPLLAHNKFMSVPKIFGQSLCDQTKIAGLHESQGKDTAPSFANSLNAATAAITADPNFTAALVAAITSVMGNSHSSTSGTNNTSGDEQCNNNA 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00900 478 MobiDBLite consensus disorder prediction 457 478 - -
Spst8g00900 478 Coils Coil 96 130 - -
Spst8g00900 478 ProSiteProfiles WRKY domain profile. 237 303 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g00900 478 MobiDBLite consensus disorder prediction 155 220 - -
Spst8g00900 478 MobiDBLite consensus disorder prediction 159 215 - -
Spst8g00900 478 Gene3D WRKY domain 227 304 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g00900 478 SUPERFAMILY WRKY DNA-binding domain 235 303 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst8g00900 478 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 59 466 IPR044810 GO:0003700
Spst8g00900 478 SMART WRKY_cls 242 302 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g00900 478 Pfam WRKY DNA -binding domain 244 301 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst8g00900 478 FunFam probable WRKY transcription factor 31 227 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00900 Spst-Chr8 7956262 7959116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00900 31 466 WRKY Transcription Factor Family AT1G62300 47.917 3.26e-114 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst8g00900 WRKY 1.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00900 - - vum:124848283 713.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02179 6 29480281 29482666 Spst8g00900 8 7956262 7959116 PCT
Spst6g02001 6 19799539 19806306 Spst8g00900 8 7956262 7959116 PCT