Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00899 ATGGTTGAAGCCTTGGAAACCGAAGAAAGGCCCAAATTCAGGGATATTAGGCGCTATTTCTGTGAGTACTGCGGTATCTGCAGATCCAAAAAAACCCTAATCACCTCTCACGTCAATTCGCATCACAAGGATGAGCTTGAAAAAACAAGAGCAGAAAGAGATCCTGAAGCAGCAGAGCCTTCGAAATCCAATACGTGCGAGGAATGTGGTGCCACTTTCAAGAAACACGCATATTTGTTGCAGCATATGCAAAGTCATTCACTTGAGAGGCCGTTTGTGTGTGCAGTTGATGGTTGTCAGGCGAGTTATAGAAGGAAGGACCACCTGACTAGGCACCTTCTACTACATGAAGGGAAGACTTTCAAGTGCCCTGTTGTTAATTGCAACATTGAATTCTCTTTGCAAAGCAATATGAAAAGGCATGTTGAAGAGATTCACGATGACAGTTCTACTGCAGCTACTGACAAAAGTCACAAACAACATCTGTGTCCAGAGATTGGATGTGGAAAAGTTTTCAGATTTGCATCACAGCTAAAAAAGCATGAAGATTCTCATGTTAAGCTTGAGTCAGTAGATGTGGTGTGTTTAGAGCCTGGCTGCATGAAACATTTTACTAATGTCCAGTGTCTTAAAGCCCATGTGATGTCCTCCCATCAATATATGACCTGTGACATTTGTGGATCTAAGCAGCTGAAGAAGAATATTAAGCGTCACCTTCGTTCACATGAAGCTAAGAGCCGTTCATCAGAGACTTTTCGATGCGAGTTTAAGGGTTGTAGCTGCTCATTCTTTAGTAAATCTAATCTTGATAAGCATAAGAAGGTTGTGCACTTTAAAGAAAAGCCTTTTCTGTGTGGGTTTCCTGATTGTGGCATGAGATTTGCTTACAAACATGTGCGGGATAATCACGAAAAAACTGCCAAACATGTTTTTATACTTGGAGATTTTGAAGAAGCTGATGAAGAGTTAAGGTCAAGGCCAAGGGGAGGGAGGAAGAGAAAATGTCCCACTGTTGAAATGTTAATCAGGAAGAGGGTTACCCCACCAAGTGAATTGGAGGATTGGTTATTTATGCAGGATCGTGAGTAG 1089 0.4187 MVEALETEERPKFRDIRRYFCEYCGICRSKKTLITSHVNSHHKDELEKTRAERDPEAAEPSKSNTCEECGATFKKHAYLLQHMQSHSLERPFVCAVDGCQASYRRKDHLTRHLLLHEGKTFKCPVVNCNIEFSLQSNMKRHVEEIHDDSSTAATDKSHKQHLCPEIGCGKVFRFASQLKKHEDSHVKLESVDVVCLEPGCMKHFTNVQCLKAHVMSSHQYMTCDICGSKQLKKNIKRHLRSHEAKSRSSETFRCEFKGCSCSFFSKSNLDKHKKVVHFKEKPFLCGFPDCGMRFAYKHVRDNHEKTAKHVFILGDFEEADEELRSRPRGGRKRKCPTVEMLIRKRVTPPSELEDWLFMQDRE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00899 362 SUPERFAMILY beta-beta-alpha zinc fingers 236 291 IPR036236 -
Spst8g00899 362 Gene3D Classic Zinc Finger 119 158 - -
Spst8g00899 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 161 190 IPR013087 -
Spst8g00899 362 Gene3D Classic Zinc Finger 93 118 - -
Spst8g00899 362 Pfam Zinc finger, C2H2 type 163 185 IPR013087 -
Spst8g00899 362 Pfam Zinc finger, C2H2 type 65 86 IPR013087 -
Spst8g00899 362 Pfam Zinc finger, C2H2 type 92 116 IPR013087 -
Spst8g00899 362 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Spst8g00899 362 ProSitePatterns Zinc finger C2H2 type domain signature. 123 146 IPR013087 -
Spst8g00899 362 PANTHER ZINC FINGER PROTEIN 5 350 - -
Spst8g00899 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 282 IPR013087 -
Spst8g00899 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 92 121 IPR013087 -
Spst8g00899 362 ProSitePatterns Zinc finger C2H2 type domain signature. 254 277 IPR013087 -
Spst8g00899 362 SMART c2h2final6 193 218 IPR013087 -
Spst8g00899 362 SMART c2h2final6 19 41 IPR013087 -
Spst8g00899 362 SMART c2h2final6 221 242 IPR013087 -
Spst8g00899 362 SMART c2h2final6 64 86 IPR013087 -
Spst8g00899 362 SMART c2h2final6 252 277 IPR013087 -
Spst8g00899 362 SMART c2h2final6 121 146 IPR013087 -
Spst8g00899 362 SMART c2h2final6 92 116 IPR013087 -
Spst8g00899 362 SMART c2h2final6 283 309 IPR013087 -
Spst8g00899 362 SMART c2h2final6 161 185 IPR013087 -
Spst8g00899 362 MobiDBLite consensus disorder prediction 38 61 - -
Spst8g00899 362 ProSitePatterns Zinc finger C2H2 type domain signature. 94 116 IPR013087 -
Spst8g00899 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 121 151 IPR013087 -
Spst8g00899 362 SUPERFAMILY beta-beta-alpha zinc fingers 119 147 IPR036236 -
Spst8g00899 362 SUPERFAMILY beta-beta-alpha zinc fingers 72 125 IPR036236 -
Spst8g00899 362 ProSitePatterns Zinc finger C2H2 type domain signature. 285 309 IPR013087 -
Spst8g00899 362 Gene3D Classic Zinc Finger 5 92 - -
Spst8g00899 362 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 91 IPR013087 -
Spst8g00899 362 Gene3D Classic Zinc Finger 159 243 - -
Spst8g00899 362 Gene3D Classic Zinc Finger 247 311 - -
Spst8g00899 362 MobiDBLite consensus disorder prediction 38 63 - -
Spst8g00899 362 ProSitePatterns Zinc finger C2H2 type domain signature. 195 218 IPR013087 -
Spst8g00899 362 ProSitePatterns Zinc finger C2H2 type domain signature. 163 185 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00899 Spst-Chr8 7952227 7954250 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00899 88 312 C2H2 Transcription Factor Family AT1G72050 48.736 1.07e-85 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst8g00899 zf-C2H2 0.0039 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00899 K09191 - gmx:100801812 655.981