Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00893 ATGGCGAATTTGTCACAATCAATCTCAATGAGTGGGGTGTCCTTTGCAACTCCTTCTGCCTCTGCAACAAAGGATCGCAGGATGGCGTCTGTCGAACACCTTGTCCTCGAACTCAGCAACCCTGATCTCCGAGAAAACGCGCTTCACGAACTCTCCAAGAAGAGAGAGTTATTTCAGGATCTTGCTCCATTACTGTGGAATTCGTTTGGCACTATGGCAGCTCTTTTGCAGGAAATAGTTTCAATATACCCTGTTATTTCACCACCGAACCTTTCTCCAGCACAATCAAATCGAGTCTGTAATGCTCTTGCTCTTCTTCAGTGTGTGGCATCTCACCTTGATACAAGGATGCAATTCCTCAATGGTAATGATGTTTTTTTTATTCATCCCAAGGACTGGGAACTTCTGTCTGCTATTCTGCTTAAGCATTTTTGCATTATTTGTTTTGATAGCGATGGAACATCTCATATACCTCTATATCTGTATCCCTTCCTTAATACAACAAGTAAGTCCAGGCCATTTGAGTATTTGAGGCTTACCAGTCTAGGAGTCATTGGTGCCTTGGTGAAGGTTGATGATACAGAAGTTATAAGTTTCCTTCTTTCGACAGAGATTATTCCGTTGTGCTTGCGGAGTATGGAAATGGGCAGTGAACTGTCAAAAACGGTTAAGTTTACTGATCTTGTTGCAACCTTTATAGTTCAAAAAATTCTGTTGGACGAAATTGGTTTGAAATATATTTGTACTACGGCGGAGCGCTTTTATGCAGTAGGTCGAGTTTTGGGAAACATGGTGGCCACTCTTGTTGAGCAGCCGTCATGCCGTCTTTTGAAGCATATTATTCGTTGTTATCTTCGTCTGTCAGATAACCAGAGTGCTTGCGAGGCTTTAAGATCCTGTCTTCCGGACATGTTAAGAGACGCTACATTCAATAGTTGCCTTCGTGAAGACCCAACAGCTAGGAGGTGGCTACAACAGTTGCTTCACAATATCGGAGTCAATCGGGTACCTGCACTTCAAGGTGGAGGAGGATTCGATCATATGATGGTATCGTAA 1056 0.4299 MANLSQSISMSGVSFATPSASATKDRRMASVEHLVLELSNPDLRENALHELSKKRELFQDLAPLLWNSFGTMAALLQEIVSIYPVISPPNLSPAQSNRVCNALALLQCVASHLDTRMQFLNGNDVFFIHPKDWELLSAILLKHFCIICFDSDGTSHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKVDDTEVISFLLSTEIIPLCLRSMEMGSELSKTVKFTDLVATFIVQKILLDEIGLKYICTTAERFYAVGRVLGNMVATLVEQPSCRLLKHIIRCYLRLSDNQSACEALRSCLPDMLRDATFNSCLREDPTARRWLQQLLHNIGVNRVPALQGGGGFDHMMVS 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00893 351 Pfam Cell differentiation family, Rcd1-like 155 331 - -
Spst8g00893 351 Pfam Cell differentiation family, Rcd1-like 34 130 - -
Spst8g00893 351 Gene3D - 23 332 IPR011989 -
Spst8g00893 351 PANTHER UNCHARACTERIZED 23 334 IPR007216 GO:0006402|GO:0030014
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00893 Spst-Chr8 7883368 7888861 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Rcd1-like Spst8g00893 Rcd1 7.9e-81 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00893 K12606 - gmx:100801266 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02004 6 19871085 19871935 Spst8g00893 8 7883368 7888861 PCT