Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00871 ATGTCTGTTCTGTGTAGATATATGGTTGAAGTGGGTATTTTTGAGATCACAAGTAACAGTTTGGACCCATTTGCTGAGGCTAAAGAAAGAGATGCCCCCGGGGCGAAGGAGTACGTGCATATCCGCATACAACAGAGGAATGGGAAGAAGAGTTTGACGACAGTGCAAGGGCTGAGGAAAGAGTTCAGCTATGATAAGATCCTGAAAGACCTGAAGAAAGAGTTCTGCTGCAATGGCAATGTTGTGCATGACAAGGAGCTTGGCAAGATCATCCAACTCCAAGGTGATCAGCGTAAAAACGTTTCTCTCTTCCTCATTCAGGCTTCCCTTGTTCGGAAGGACCAGATCAAGATTCATGGTTTTTGA 366 0.4508 MSVLCRYMVEVGIFEITSNSLDPFAEAKERDAPGAKEYVHIRIQQRNGKKSLTTVQGLRKEFSYDKILKDLKKEFCCNGNVVHDKELGKIIQLQGDQRKNVSLFLIQASLVRKDQIKIHGF 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00871 121 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR SUI1 19 121 - -
Spst8g00871 121 PIRSF Transl_init_SUI1_Euk 10 121 IPR005874 GO:0003743
Spst8g00871 121 NCBIfam translation initiation factor SUI1 19 121 IPR005874 GO:0003743
Spst8g00871 121 Pfam Translation initiation factor SUI1 36 108 IPR001950 GO:0003743|GO:0006413
Spst8g00871 121 SUPERFAMILY eIF1-like 14 121 IPR036877 GO:0003743|GO:0006413
Spst8g00871 121 Gene3D - 10 121 - -
Spst8g00871 121 ProSiteProfiles Translation initiation factor SUI1 family profile. 39 109 IPR001950 GO:0003743|GO:0006413
Spst8g00871 121 FunFam Eukaryotic translation initiation factor SUI1 11 121 - -
Spst8g00871 121 CDD eIF1_SUI1 37 120 IPR005874 GO:0003743
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00871 Spst-Chr8 7741891 7743293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00871 8 121 Eukaryotic Initiation Factors Gene Family AT5G54940 77.193 5.26e-60 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00871 K03113 - gmx:100499676 206.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00871 8 7741891 7743293 Spst8g00871 8 7741891 7743293 ECH
Spst6g02031 6 20504498 20505382 Spst8g00871 8 7741891 7743293 PCT