Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst8g00859 | ATGAGGAGACCGAAATCGAAGGAGTTTCGGAAGCAACAGCGCCTCTCAGAGCAGGAAGAGATAAGCCTGTTGAATTCATGGATCCAGTTTCAGCCACCGGACTCCGGTTCCAACCCAGTGTCGCTCCCTCCTCTCCCCAAAAACTCCCCCGTTGCCCGCCTCGAAGACAACACCTACTCGCGCTACGCCGGCGCGTCCCGCTTCGACCAAATCCCTCTCTCCAAGAAAACCAAGGACGCCCTCCGAGAAGCCAAGTTCGTCGTCATGACCGACATCCAGAGAGCATCTCTTCCACACGCACTCTGTGGCCGAGATATCCTTGGCGCCGCCAAAACGGGCTCCGGTAAAACCCTTGCTTTCATTATCCCTGTGTTGGAGAAGTTGTATAGAGAGAGATGGGGGCCTGAAGATGGCGTTGGCAGCATTATCATATCGCCTACTAGGGAATTGGCTGGTCAGATATTTGACGTGTTGAAGATTGTTGGAAAACACCATAATTTTAGTGCTGGCCTTCTCATTGGTGGTCGAAAGGATGTTGACATGGAGAAAGAACATGTTAATGAGCTCAACATATTGATCTGCACGCCCGGTAGGCTGCTGCAACACATGGATGAAACTCCCAATTTTGATTGTTCGCAGATGCAGGTTTTGGTGCTAGATGAGGCTGATCGCATTCTAGACAGTGGGTTCAAGAAGGAACTAAATGCAATAATTTCTCAACTACCAAAGCGGAGGCAAACCTTGCTTTTCTCTGCAACTCAAACAAAGTCAATTCAAGATCTTGCCAGACTAAGTTTGAAGGATCCAGAGTATCTGAGTGTGCATGAAGAATCTTTGACTGCCACTCCTACTCTGTTGAAACAAATTGTGATGATTGTTCCCCTCAATCAAAAGTTAGATATGCTGTGGAGTTTCATAAAGACACATCTACAGTCGAAAATGCTTGTCTTTCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCAGGCATACCATTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTCAACTGATGTGGCCGCAAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCCGAAAATGTAGCTTCTTACATACATAGAGTTGGTCGCACTGCTCGATATAAATCTGGTGGAAAGTCAGTTTTATTTCTGTTGCCTTCAGAAATGCAAATGCTTGAAAAGTTAAAAGCAGCAAAGGTTCCAGTGCATTTTAATAAGCCAAGGCAAGAACTACTGCAACCAGTTTCTAGTCTGTTGGCATCTTTGCTTGTCAAATACCCAGACCTGCAGCATCGGGCTCAGAGGGCGTTTATCACATACTTGAGATCCATCCATTTACAAAAGGATAAAGACATATTCGATGTTTTGAAACTGCCTATTGACAAGTATTCAGCATCATTAGGTTTACCAATGACCCCCAAAATCCGTTTTCTAAACCAGAAAATTAAATCTAAAGCTGCATCAGAGAAATCAATTTTAGTTGAACCAGAAGATTCAAGCAAGGAAAATAATGTCTTGGAGGTTTCAAGAAACAAGATATACACAGATCCTTTGGAGGATGAAAAAATTGAAAATGATCTTTTTGAGTTAGCAGATCCTCCTACAAATGAAGACGAAATGAAGTCATCTGAAATTGAAGAATTGATACCAGAAACTCGTGTTTTGAAGAAAAAGAAACTCAAGATTAATGTACATAGGCCAGTTGGGACCAGGGTTGTATTTGATGATGAAGGCAACACACTTCCTCCGCTAGCCAGGATAGCTGACACACAAAGTGGCAAGGAAGGTGTGCTGCTTGACCCAGAACAAAAAGCTGAATTCTATAGAAGGATGCGCGATGATTTAAAGAAGGCTGACAAGGAAGATAAGCTTATAGAGCGGAAGCGGCTTAGAGAAAAAAGAATAAAGCAGAAGATGAAATTTAAGGCTGGGAATGAGGAAGAAGAGGACGACCAAGACGATATTTCGGGATCAGAAGGAGACGAAACTATTAACAGACGGCATAAAAAGAGTAAAGTATACTTTGATAGTGACAGTGACGAGGGTGAAAGAAATGAAGTCGCAGGGAATGCACGTACAAGTTCTGGCGCGGTTACTTTGGAGGAGCAAGAAGCTCTGGCTTTAAAATTGTTAAATTCTATGCACTCCTAG | 2250 | 0.4333 | MRRPKSKEFRKQQRLSEQEEISLLNSWIQFQPPDSGSNPVSLPPLPKNSPVARLEDNTYSRYAGASRFDQIPLSKKTKDALREAKFVVMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQIFDVLKIVGKHHNFSAGLLIGGRKDVDMEKEHVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESLTATPTLLKQIVMIVPLNQKLDMLWSFIKTHLQSKMLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEMQMLEKLKAAKVPVHFNKPRQELLQPVSSLLASLLVKYPDLQHRAQRAFITYLRSIHLQKDKDIFDVLKLPIDKYSASLGLPMTPKIRFLNQKIKSKAASEKSILVEPEDSSKENNVLEVSRNKIYTDPLEDEKIENDLFELADPPTNEDEMKSSEIEELIPETRVLKKKKLKINVHRPVGTRVVFDDEGNTLPPLARIADTQSGKEGVLLDPEQKAEFYRRMRDDLKKADKEDKLIERKRLREKRIKQKMKFKAGNEEEEDDQDDISGSEGDETINRRHKKSKVYFDSDSDEGERNEVAGNARTSSGAVTLEEQEALALKLLNSMHS | 749 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst8g00859 | 749 | Gene3D | - | 284 | 593 | IPR027417 | - | |
Spst8g00859 | 749 | MobiDBLite | consensus disorder prediction | 692 | 720 | - | - | |
Spst8g00859 | 749 | Pfam | Helicase conserved C-terminal domain | 298 | 407 | IPR001650 | - | |
Spst8g00859 | 749 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 66 | 94 | IPR014014 | GO:0003724 | |
Spst8g00859 | 749 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 62 | 274 | IPR027417 | - | |
Spst8g00859 | 749 | SMART | helicmild6 | 325 | 408 | IPR001650 | - | |
Spst8g00859 | 749 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 218 | 226 | IPR000629 | - | |
Spst8g00859 | 749 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 298 | 452 | IPR001650 | - | |
Spst8g00859 | 749 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 97 | 272 | IPR014001 | - | |
Spst8g00859 | 749 | Pfam | Domain of unknown function (DUF4217) | 451 | 508 | IPR025313 | - | |
Spst8g00859 | 749 | CDD | DEADc_DDX10 | 77 | 275 | - | - | |
Spst8g00859 | 749 | PANTHER | RNA HELICASE | 63 | 552 | - | - | |
Spst8g00859 | 749 | SMART | DUF4217_3 | 447 | 510 | IPR025313 | - | |
Spst8g00859 | 749 | MobiDBLite | consensus disorder prediction | 672 | 733 | - | - | |
Spst8g00859 | 749 | Pfam | DEAD/DEAH box helicase | 90 | 260 | IPR011545 | GO:0003676|GO:0005524 | |
Spst8g00859 | 749 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 213 | 424 | IPR027417 | - | |
Spst8g00859 | 749 | CDD | SF2_C_DEAD | 286 | 417 | - | - | |
Spst8g00859 | 749 | Gene3D | - | 49 | 278 | IPR027417 | - | |
Spst8g00859 | 749 | SMART | ultradead3 | 85 | 289 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst8g00859 | Spst-Chr8 | 7672272 | 7677521 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst8g00859 | 93 | 429 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 30.117 | 1.01e-36 | 141 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst8g00859 | K14776 | - | gmx:100792106 | 1298.49 |