Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00859 ATGAGGAGACCGAAATCGAAGGAGTTTCGGAAGCAACAGCGCCTCTCAGAGCAGGAAGAGATAAGCCTGTTGAATTCATGGATCCAGTTTCAGCCACCGGACTCCGGTTCCAACCCAGTGTCGCTCCCTCCTCTCCCCAAAAACTCCCCCGTTGCCCGCCTCGAAGACAACACCTACTCGCGCTACGCCGGCGCGTCCCGCTTCGACCAAATCCCTCTCTCCAAGAAAACCAAGGACGCCCTCCGAGAAGCCAAGTTCGTCGTCATGACCGACATCCAGAGAGCATCTCTTCCACACGCACTCTGTGGCCGAGATATCCTTGGCGCCGCCAAAACGGGCTCCGGTAAAACCCTTGCTTTCATTATCCCTGTGTTGGAGAAGTTGTATAGAGAGAGATGGGGGCCTGAAGATGGCGTTGGCAGCATTATCATATCGCCTACTAGGGAATTGGCTGGTCAGATATTTGACGTGTTGAAGATTGTTGGAAAACACCATAATTTTAGTGCTGGCCTTCTCATTGGTGGTCGAAAGGATGTTGACATGGAGAAAGAACATGTTAATGAGCTCAACATATTGATCTGCACGCCCGGTAGGCTGCTGCAACACATGGATGAAACTCCCAATTTTGATTGTTCGCAGATGCAGGTTTTGGTGCTAGATGAGGCTGATCGCATTCTAGACAGTGGGTTCAAGAAGGAACTAAATGCAATAATTTCTCAACTACCAAAGCGGAGGCAAACCTTGCTTTTCTCTGCAACTCAAACAAAGTCAATTCAAGATCTTGCCAGACTAAGTTTGAAGGATCCAGAGTATCTGAGTGTGCATGAAGAATCTTTGACTGCCACTCCTACTCTGTTGAAACAAATTGTGATGATTGTTCCCCTCAATCAAAAGTTAGATATGCTGTGGAGTTTCATAAAGACACATCTACAGTCGAAAATGCTTGTCTTTCTTTCAAGCTGTAAACAGGTAAAATTTGTCTTTGAAGCATTTAAGAAACTGCACCCAGGCATACCATTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAGAAGAATGGCAATATATTCTGAGTTTTGTGAGAAGCGCTCAGTTCTCTTCTCAACTGATGTGGCCGCAAGAGGCCTTGATTTTAATAAGGCAGTTGACTGGGTTGTTCAGGTGGATTGTCCCGAAAATGTAGCTTCTTACATACATAGAGTTGGTCGCACTGCTCGATATAAATCTGGTGGAAAGTCAGTTTTATTTCTGTTGCCTTCAGAAATGCAAATGCTTGAAAAGTTAAAAGCAGCAAAGGTTCCAGTGCATTTTAATAAGCCAAGGCAAGAACTACTGCAACCAGTTTCTAGTCTGTTGGCATCTTTGCTTGTCAAATACCCAGACCTGCAGCATCGGGCTCAGAGGGCGTTTATCACATACTTGAGATCCATCCATTTACAAAAGGATAAAGACATATTCGATGTTTTGAAACTGCCTATTGACAAGTATTCAGCATCATTAGGTTTACCAATGACCCCCAAAATCCGTTTTCTAAACCAGAAAATTAAATCTAAAGCTGCATCAGAGAAATCAATTTTAGTTGAACCAGAAGATTCAAGCAAGGAAAATAATGTCTTGGAGGTTTCAAGAAACAAGATATACACAGATCCTTTGGAGGATGAAAAAATTGAAAATGATCTTTTTGAGTTAGCAGATCCTCCTACAAATGAAGACGAAATGAAGTCATCTGAAATTGAAGAATTGATACCAGAAACTCGTGTTTTGAAGAAAAAGAAACTCAAGATTAATGTACATAGGCCAGTTGGGACCAGGGTTGTATTTGATGATGAAGGCAACACACTTCCTCCGCTAGCCAGGATAGCTGACACACAAAGTGGCAAGGAAGGTGTGCTGCTTGACCCAGAACAAAAAGCTGAATTCTATAGAAGGATGCGCGATGATTTAAAGAAGGCTGACAAGGAAGATAAGCTTATAGAGCGGAAGCGGCTTAGAGAAAAAAGAATAAAGCAGAAGATGAAATTTAAGGCTGGGAATGAGGAAGAAGAGGACGACCAAGACGATATTTCGGGATCAGAAGGAGACGAAACTATTAACAGACGGCATAAAAAGAGTAAAGTATACTTTGATAGTGACAGTGACGAGGGTGAAAGAAATGAAGTCGCAGGGAATGCACGTACAAGTTCTGGCGCGGTTACTTTGGAGGAGCAAGAAGCTCTGGCTTTAAAATTGTTAAATTCTATGCACTCCTAG 2250 0.4333 MRRPKSKEFRKQQRLSEQEEISLLNSWIQFQPPDSGSNPVSLPPLPKNSPVARLEDNTYSRYAGASRFDQIPLSKKTKDALREAKFVVMTDIQRASLPHALCGRDILGAAKTGSGKTLAFIIPVLEKLYRERWGPEDGVGSIIISPTRELAGQIFDVLKIVGKHHNFSAGLLIGGRKDVDMEKEHVNELNILICTPGRLLQHMDETPNFDCSQMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTLLFSATQTKSIQDLARLSLKDPEYLSVHEESLTATPTLLKQIVMIVPLNQKLDMLWSFIKTHLQSKMLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQERRMAIYSEFCEKRSVLFSTDVAARGLDFNKAVDWVVQVDCPENVASYIHRVGRTARYKSGGKSVLFLLPSEMQMLEKLKAAKVPVHFNKPRQELLQPVSSLLASLLVKYPDLQHRAQRAFITYLRSIHLQKDKDIFDVLKLPIDKYSASLGLPMTPKIRFLNQKIKSKAASEKSILVEPEDSSKENNVLEVSRNKIYTDPLEDEKIENDLFELADPPTNEDEMKSSEIEELIPETRVLKKKKLKINVHRPVGTRVVFDDEGNTLPPLARIADTQSGKEGVLLDPEQKAEFYRRMRDDLKKADKEDKLIERKRLREKRIKQKMKFKAGNEEEEDDQDDISGSEGDETINRRHKKSKVYFDSDSDEGERNEVAGNARTSSGAVTLEEQEALALKLLNSMHS 749
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00859 749 Gene3D - 284 593 IPR027417 -
Spst8g00859 749 MobiDBLite consensus disorder prediction 692 720 - -
Spst8g00859 749 Pfam Helicase conserved C-terminal domain 298 407 IPR001650 -
Spst8g00859 749 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 66 94 IPR014014 GO:0003724
Spst8g00859 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 274 IPR027417 -
Spst8g00859 749 SMART helicmild6 325 408 IPR001650 -
Spst8g00859 749 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 218 226 IPR000629 -
Spst8g00859 749 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 298 452 IPR001650 -
Spst8g00859 749 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 97 272 IPR014001 -
Spst8g00859 749 Pfam Domain of unknown function (DUF4217) 451 508 IPR025313 -
Spst8g00859 749 CDD DEADc_DDX10 77 275 - -
Spst8g00859 749 PANTHER RNA HELICASE 63 552 - -
Spst8g00859 749 SMART DUF4217_3 447 510 IPR025313 -
Spst8g00859 749 MobiDBLite consensus disorder prediction 672 733 - -
Spst8g00859 749 Pfam DEAD/DEAH box helicase 90 260 IPR011545 GO:0003676|GO:0005524
Spst8g00859 749 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 424 IPR027417 -
Spst8g00859 749 CDD SF2_C_DEAD 286 417 - -
Spst8g00859 749 Gene3D - 49 278 IPR027417 -
Spst8g00859 749 SMART ultradead3 85 289 IPR014001 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Spst8g00859 Spst-Chr8 7672272 7677521 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00859 93 429 Eukaryotic Initiation Factors Gene Family AT3G19760 30.117 1.01e-36 141
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00859 K14776 - gmx:100792106 1298.49