Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00846 ATGAGTTTCTTTTCATGTTGCACGTCACAAGAGAAGATCAACAAGAACACATTGGAAAGGAGCAGTGCGGACTTCCATTATGCACAAGCTTTGCCACCATGCGCCAGCATGTGTTTTAAACCTGATAACAGAAGCAGAAAGTTCATAGAACAAGAAATCGCAAAGATCGGAAAAGGGAATATTTCCTCTCAGACTTTTTCTTATCACGATCTATGTGTTGCAACTCGAAACTTTCACCCTGGCAATATGATTGGTGAAGGAGGTTTTGGAATGGTATACAAGGGACTCATTAAAAGCATAAATCAGGTTGTTGCGGTGAAGAAACTTAACAGGAATGGATTCCAAGGAAACAGGGAATTTCTTGTAGAGGTTTTGATATTGAGTCTCTTGCACCACCCTAACCTTGTCAATTTGGTAGGGTATTGTGCAGATGGTGAGCAAAGGATTTTGGTATACGAGTACATGGTGAATGGTTCTTTAGAAGATCACCTTCTTGAACTACCTGCGGATAGAAAGCCTTTGGATTGGCATACTAGAATGAAAATTGCAGCAGGTGCAGCTAGAGGACTAGAATACTTGCATGAAGTAGCAAATCCACCAGTGATATACCGTGATTTCAAATCATCAAACATTCTATTAGATGAAAACTTCAATCCAAAGCTCTCTGATTTTGGACTTGCAAAGCTTGGTCCAACTGGTGATAAAACTCATGTATCCACGAGGGTGATGGGAACTTATGGCTATTGTGCACCCGAGTATGCATCAACAGGTCAATTGACAACAAAATCAGATATATACAGCTTCGGAGTAGTATTTCTAGAGATGATCACAGGAAGAAGAGTAATCGATCAGTCAAGACCATCTCTAGAGCAAAACTTGGTCACTTGGGCACAACCACTATTCAAAGACAGAAGGAAATCTACATTAATGGCTGATCCATTGCTAAAAGGTAACTACCCTAAAAAGGGTCTACACCAAGCACTTGCAGTTGCAGCAATGTGTCTTCAGGAGGAAGCACATACCCGACCTTTGATTAGTGACGTGGTTACAGCTCTTGATGTTTTGGCAAAGAAGCAGATACAATTGCTGGCTCCTAATCTGTTTCGTTGTGGAGGGAGCACTCGACTGGAGGTGACTGTTGCCTCAATGGAGGTGTCTGCTTTAAGGCCGCACTGTCCCTTATGCCGCCGCTGCTTCTCACTCCCCTTCCCTTGCCCTTCCCTTTTACCTTCTTCATCACTGCAACGAAGAAAAATTCAGTCATTCCAAATTTCATACAATGGCCTTCGAAATAGCTCTGTGCCTGGAAATTCTGTACAATCTAGAGCAGATTTTCCTTGCTGTCCAAAAGGGACATCAATGGGGCTTAATAAATACTATGGCGTGAGGTATGATCGTGATTTCCCCTGCAAAAGTTCAGTTTGCACTACATCTATGAAAATTGCTAATGCATCAACTGGCACACTAGAGGAGGTGATAGAGGAAGAAGAGCTGAATTTTTTGCGTTCATGTGAAACGCAAGTTAGGACTGTGGATGTGGCTCCTTGTAATAATGGATTATCCGCAACCACTGCAGGTAGAAATTTGTCTGGTGGTGATTGTAGAGGCTGGACTATAGCAAAAGATAAGTTAACTGAAAATAAAAAGGAAATGAATGGCTCAAAGAAATTTGATACGGAAAATGGCAGTTCCAATGCATCTAATGGAGTTGCTTCCTTTGGTCAGAACCGGGCTGTTTTAAAGAACGGGGATAGGAATATTATACTGCAGGATCACCGTGAATATGTCTCATCTAATGTTAAATATTCTGTAGTAAACAAATCAAAGGTGTTTACAGATTCTGAAAGGGTGGTCCGCCAGTCTAAAATGTCTTCACTGGGAATTGGTAAAGCAAAAATCACTGTAGTAAATGGTGATCATGGTATGGATGGAACTGCAAAAGATTCAACTAATGAAACATTTGCGAAACAGACACGAGATACTGACAATTCAAAGCTTCGGGATAGGCTCTGTAGTATCTATGAAGATATTCTGGTGGTTGATAATATTCCTCTTGCACAGGAAGTTTCGAAAATGCTCACAACGAAGTACAGGCATCTCATATACGCATGTGATACCGAGGTAGCCAAGATAGATGTCAAACAAGAAACTCCTGTAGATCATGGTGAGATAATATGCTTCAGCATTTATTGTGGTCCAGAAGCGGATTTTGGAGGTGGAAAGTCTTGTATCTGGGTAGATGTTCTTGATGGTGGAGGAAAAGCGATTTTAGAAAAATTTGCTGAATTTTTTAGTGACTCTTCTATCAAGAAGGTCTGGCATAATTATAGCTTTGACTCTCATGTTATAGAGAATTATGGATTCAAAGTTTCTGGATTTCATGCTGATACAATGCACATGGCCCGATTATGGGACTCTTCAAGACTTTTGGATGGGGGTTATTCTCTTGAAGGGCTTACAGGCGACAGAAGGGTCATGTCTAGGGCTCAGCTGAACCATCAAAAGGATTTGATTGGTAAGGTATCAATGAAAACTATATTTAGTAAGAAAAAAGTGAAAAAAGATGGATCTGAGGGTAAAACTAGTATCATTGCTCCTGTGGAAGAGCTACAGAGAGATGAGCGTATACCTTGGATATGTTATTCTGCCTTAGATGCTAGCAGCACTTTGAAGCTGTATGAGAGCCTAAAGGGCCATCTTTCAGACATGCCCTGGAAATTTGATGGTGTACCAGTTTATGGGAAAACCATGTATGATTTCTACAATGAATATTGGCAGCCATTTGGTGAGCTTCTAGCCAAGATGGAATCTGAGGGAATGCTAGTTGATCGGGCTTATCTTGAAAGCATAGAAAAGGTGGCCAAAGCAGAGGAAGAGGTAGCTACTAATAGATTCCGGAAATGGGCAAGTAGGTATTGTCCTGATGCCCAATATATGAATGTGGGAAGTGATTCACAGTTGCGCCAGCTGCTTTTTGGTGGCACTTTGAACAGAAAGGACTCCAGCATGGCACTTCCCACTGAACGAGTATTCAAAATTCCCAATGTTGATAATGTGATTGAAGAAGGAAAGAAGGCTCCAAAAAAATTTCGTGATATAAAGGTGACGAGCCTAGGTTATAACCTGAAGACTGAGATGTACACAGCAACTGGTTGGCCATCAGTTAGTGGTGATGCTTTAAAGGCCATGGCTGGAAATATTTCTGCTGATTATGACTTTTTTAATGACGATTGTAACTTGGATCGTGATGATGAAGATGAAAATTCTTCTCAAAGTCAAGTTGCAGCTCTAAAACTTGATACATCTGCCTATGGAACAGCCTATGCGGCTTTTCCAACAGAGGAAGAAGGGAGAGAAGCTTGCCATGCAATTGCTGCTTTATGTCAAGTTTGTTCTATCAACTCTTTGATTTCTAACTTCATCCTTCCCTTGCAGGGACATAATATATCTGGAAAAGATCTCCGTGTTCATTGTTCCTTAAATATCAACACGGAAACAGGACGCTTGTCTGCAAGAAGGCCAAATCTGCAGAATCAACCTGCTCTGGAAAAAGACCGATACAAAATCCGTCAAGCATTCATTGCTGCACCTGGGAATTCTCTTATAGTTGCTGATTATGGACAGCTGGAACTTCGGATTCTGGCACATCTTGCAGACTGTAAGAGCATGTTGGAAGCTTTTAAAGCTGGTGGAGATTTTCATTCAAGGACTGCAATGAATATGTACCCATATATTCGTGAAGCAGTTGAGAAAAAGGAAGTGCTTCTTGAGTGGCATCCTAAGCCCGGTGAAGATAAACCCCCAGTTCCTCTTTTGAAGGATGCCTTTGGTTCTGAAAGAAGAAAAGCTAAAATGCTTAACTTCTCAATTGCATACGGGAAGACACCTGTGGGGCTTTCCAAGGATTGGAAGGTTTCTGTGAAAGATGCTAAGAAAACAGTTGACCTTTGGTACAATGATAGAAAAGAGGTTTTGCAATGGCAAGAGGAGCGTAAAAAGGAAGCTCATGAGTTACATTGTGTCCACACATTGCTAGGGCGAGCACGACGGTTCCCTTTGATGGCCCAAGCTAACAAATATCAGAAAGGTCACATTGAACGAGCTGCTATTAATACTCCAGTGCAGGGTAGTGCAGCTGATGTTGCCATGTGCGCCATGTTGCAAATTTCCAAGAATAAGCGGTTGAAGGAACTTGGGTGGAAGTTACTTCTACAGGTTCATGATGAAGTCATATTGGAAGGACCAACAGAATCGGCTGAGGTTGCAAAGTCCATAGTCGTTGAGTGCATGTCCAAACCCTTTAGTGGCAGGAATATTCTTAAAGTTGACCTCTCTGTTGATGCTAAGTGTGCTCAGAACTGGAGCATGGCTCAGAGGATGGAGACCATAAAAGGTGGAGGAGGATCCGTCAAGCTTGGCACCACGGGAACAATCAGTTCCTTGATGACAAGGGAATTGGATCACGTCTCTTCTGCCCCAAATAAACAGGTATCTTCAACAAGGAGTAAAGCACAAACAATTCCTGTTTCAGTTCCCTGTGGCAGTACTACCCAAAAAAGACTACAACCAAGAAAATCATCAGTTGAAGCGAGTAGCAGTGGAAGCAGTAAAAACACAAATCGTAGAGGCCCTGGCAATGGCATGCCCCAAAAATCAAAAACTAATGGCAGAAATACACAGAGAATACCCATGCTAGGTTCTGATAAATGTTCAGTGGACAGAACTCCAGTGAGGGAGAAAAATGATAAAAAGATACCTAACATTGTTGAAGTTGTGGACATAAAATGTGGGAATGCAGAAAAGGCTTGGGCTACACCCTTAGCAAGTCGTCTTAAGAAGCTTGGTTTTTCAAAGCTCTCCGAGAGCATAATCTAA 4875 0.4176 MSFFSCCTSQEKINKNTLERSSADFHYAQALPPCASMCFKPDNRSRKFIEQEIAKIGKGNISSQTFSYHDLCVATRNFHPGNMIGEGGFGMVYKGLIKSINQVVAVKKLNRNGFQGNREFLVEVLILSLLHHPNLVNLVGYCADGEQRILVYEYMVNGSLEDHLLELPADRKPLDWHTRMKIAAGAARGLEYLHEVANPPVIYRDFKSSNILLDENFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYASTGQLTTKSDIYSFGVVFLEMITGRRVIDQSRPSLEQNLVTWAQPLFKDRRKSTLMADPLLKGNYPKKGLHQALAVAAMCLQEEAHTRPLISDVVTALDVLAKKQIQLLAPNLFRCGGSTRLEVTVASMEVSALRPHCPLCRRCFSLPFPCPSLLPSSSLQRRKIQSFQISYNGLRNSSVPGNSVQSRADFPCCPKGTSMGLNKYYGVRYDRDFPCKSSVCTTSMKIANASTGTLEEVIEEEELNFLRSCETQVRTVDVAPCNNGLSATTAGRNLSGGDCRGWTIAKDKLTENKKEMNGSKKFDTENGSSNASNGVASFGQNRAVLKNGDRNIILQDHREYVSSNVKYSVVNKSKVFTDSERVVRQSKMSSLGIGKAKITVVNGDHGMDGTAKDSTNETFAKQTRDTDNSKLRDRLCSIYEDILVVDNIPLAQEVSKMLTTKYRHLIYACDTEVAKIDVKQETPVDHGEIICFSIYCGPEADFGGGKSCIWVDVLDGGGKAILEKFAEFFSDSSIKKVWHNYSFDSHVIENYGFKVSGFHADTMHMARLWDSSRLLDGGYSLEGLTGDRRVMSRAQLNHQKDLIGKVSMKTIFSKKKVKKDGSEGKTSIIAPVEELQRDERIPWICYSALDASSTLKLYESLKGHLSDMPWKFDGVPVYGKTMYDFYNEYWQPFGELLAKMESEGMLVDRAYLESIEKVAKAEEEVATNRFRKWASRYCPDAQYMNVGSDSQLRQLLFGGTLNRKDSSMALPTERVFKIPNVDNVIEEGKKAPKKFRDIKVTSLGYNLKTEMYTATGWPSVSGDALKAMAGNISADYDFFNDDCNLDRDDEDENSSQSQVAALKLDTSAYGTAYAAFPTEEEGREACHAIAALCQVCSINSLISNFILPLQGHNISGKDLRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRILAHLADCKSMLEAFKAGGDFHSRTAMNMYPYIREAVEKKEVLLEWHPKPGEDKPPVPLLKDAFGSERRKAKMLNFSIAYGKTPVGLSKDWKVSVKDAKKTVDLWYNDRKEVLQWQEERKKEAHELHCVHTLLGRARRFPLMAQANKYQKGHIERAAINTPVQGSAADVAMCAMLQISKNKRLKELGWKLLLQVHDEVILEGPTESAEVAKSIVVECMSKPFSGRNILKVDLSVDAKCAQNWSMAQRMETIKGGGGSVKLGTTGTISSLMTRELDHVSSAPNKQVSSTRSKAQTIPVSVPCGSTTQKRLQPRKSSVEASSSGSSKNTNRRGPGNGMPQKSKTNGRNTQRIPMLGSDKCSVDRTPVREKNDKKIPNIVEVVDIKCGNAEKAWATPLASRLKKLGFSKLSESII 1624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00846 1624 CDD DNA_pol_A_plastid_like 1051 1455 - -
Spst8g00846 1624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 201 213 IPR008271 GO:0004672|GO:0006468
Spst8g00846 1624 FunFam DNA polymerase I 1209 1378 - -
Spst8g00846 1624 Gene3D - 1164 1454 - -
Spst8g00846 1624 CDD STKc_IRAK 84 353 - -
Spst8g00846 1624 Gene3D Transferase(Phosphotransferase) domain 1 155 365 - -
Spst8g00846 1624 Gene3D Phosphorylase Kinase; domain 1 40 154 - -
Spst8g00846 1624 Gene3D - 682 936 IPR036397 GO:0003676
Spst8g00846 1624 Pfam Protein kinase domain 79 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00846 1624 ProSiteProfiles Protein kinase domain profile. 78 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00846 1624 FunFam DNA polymerase I 678 936 - -
Spst8g00846 1624 PRINTS DNA-polymerase family A (pol I) signature 1155 1177 IPR002298 GO:0003887|GO:0006261
Spst8g00846 1624 PRINTS DNA-polymerase family A (pol I) signature 1230 1243 IPR002298 GO:0003887|GO:0006261
Spst8g00846 1624 PRINTS DNA-polymerase family A (pol I) signature 1371 1387 IPR002298 GO:0003887|GO:0006261
Spst8g00846 1624 PRINTS DNA-polymerase family A (pol I) signature 1200 1223 IPR002298 GO:0003887|GO:0006261
Spst8g00846 1624 PRINTS DNA-polymerase family A (pol I) signature 1178 1193 IPR002298 GO:0003887|GO:0006261
Spst8g00846 1624 PRINTS DNA-polymerase family A (pol I) signature 1401 1414 IPR002298 GO:0003887|GO:0006261
Spst8g00846 1624 Gene3D - 1209 1378 - -
Spst8g00846 1624 CDD DNA_polA_I_Ecoli_like_exo 696 934 - -
Spst8g00846 1624 SMART polaultra3 1188 1418 IPR001098 GO:0003677|GO:0003887|GO:0006260
Spst8g00846 1624 SUPERFAMILY Ribonuclease H-like 677 900 IPR012337 -
Spst8g00846 1624 MobiDBLite consensus disorder prediction 1488 1565 - -
Spst8g00846 1624 SMART serkin_6 78 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00846 1624 ProSitePatterns Protein kinases ATP-binding region signature. 84 108 IPR017441 GO:0005524
Spst8g00846 1624 Pfam 3'-5' exonuclease 731 898 IPR002562 GO:0003676|GO:0006139|GO:0008408
Spst8g00846 1624 FunFam Serine/threonine-protein kinase PBS1 155 367 - -
Spst8g00846 1624 FunFam Serine/threonine-protein kinase CDL1-like 49 154 - -
Spst8g00846 1624 PANTHER DNA POLYMERASE I 649 1458 IPR002298 GO:0003887|GO:0006261
Spst8g00846 1624 MobiDBLite consensus disorder prediction 550 570 - -
Spst8g00846 1624 SUPERFAMILY DNA/RNA polymerases 917 1455 IPR043502 -
Spst8g00846 1624 Pfam DNA polymerase family A 1123 1455 IPR001098 GO:0003677|GO:0003887|GO:0006260
Spst8g00846 1624 MobiDBLite consensus disorder prediction 1488 1579 - -
Spst8g00846 1624 SUPERFAMILY Protein kinase-like (PK-like) 64 367 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00846 Spst-Chr8 7578535 7595337 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00846 60 356 Glycoside Hydrolase AT3G07070 70.370 2.45e-144 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Spst8g00846 DNA_pol_A 1e-70 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00846 K02335 - gmx:100797016 1853.18