Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00838 ATGTTACATCCAGTTGTGATGGGGAAAAATGAGTTTCTCACACCTAAAGCAATTGCCAATCGAATAAAAGCAAAAGGATTACAGAAGCTTCGTTGGTATTGCCAGATGTGTCAGAAACAGTGCCGAGATGAGAATGGATTTAAATGTCATTGCATGAGTGAAGGGCACCAGCGTCAAATGCAGATCTTTGGACAAAATCCACACCGGATAGTCGAGGGCTATTCTGAAGAGTTTGAGAGTTCTTTTCTGGAGCACATGAAGCGCAGCCACAGATTCAGCCGTGTGGCAGCTACTGTAGTTTATAACGAATACATAAATGATAGACACCATGTTCATATGAACTCCACCCAGTGGGCTACACTTACTGAATTTGTCAAGTACTTGGGTCGAACTGGCAAGTGTAAAGTTGAGGAAACACCCAAGGGATGGTTCATTACATACATAGACAGAGACTCAGAAACCCTCTTTAAGGAGAAGATGAAGAATAAGAAAATCAAGGCAGATATGGCAGATGAAGAAAAGCAAGAGAAGGAGATCAGAAAACAGATCGAAATGGCTGAGCAACTGATGCAGCTTCCGATTGCTGAAGAGCCTTCACAATCTCAGCCTCCAAGGGAATTAAATATGGAAGATGGAATTAAGATAGGGTTTTCTCTTGGGTCATCATTGGTTAAACAACCTGTGACCAAGGAAAAACGTGAAAGGATGGTGTTTGATGAGGTTGTTGAAGAGAAATATGGACAAAGAAATCCTGTAAACAAGTTGAAGAGGAAAGAAAACTGTGGTGGAAAATCAGCTTTGGATGAAATGATGAAGGATGAAGAGAAGAAAAAGGAAAAAATCAACCGTAAGGATTACTGGTTGCAGGAGGGAATCGTGGTAAAGGTTATGAGCAAAGTGTTGGCAGAGAAGGGTTACTACAAGCAAAAGGGTGTTGTACGGAAGGTGATTGATAAATACGTTGGGGAGATAGAAATACTTGAAAGTAAGCATGTGCTCAGAGTTGACCAGGCAGAGCTTGAAACTGTGATTCCACAAGTTGGGGGTCGTGTAAAGATTGTCAATGGTGCATATCGAGGATCAATTGCAAAGTTATTGGGGGTGGACACAGATAATTTTTGTGCTAAGGTGCAGATCGAGAAAGGACTCTATGATGGCAGAGTACTTGAAGCTATGGAATATGAGGACATTTGTAAAGTAGCCTAG 1206 0.4154 MLHPVVMGKNEFLTPKAIANRIKAKGLQKLRWYCQMCQKQCRDENGFKCHCMSEGHQRQMQIFGQNPHRIVEGYSEEFESSFLEHMKRSHRFSRVAATVVYNEYINDRHHVHMNSTQWATLTEFVKYLGRTGKCKVEETPKGWFITYIDRDSETLFKEKMKNKKIKADMADEEKQEKEIRKQIEMAEQLMQLPIAEEPSQSQPPRELNMEDGIKIGFSLGSSLVKQPVTKEKRERMVFDEVVEEKYGQRNPVNKLKRKENCGGKSALDEMMKDEEKKKEKINRKDYWLQEGIVVKVMSKVLAEKGYYKQKGVVRKVIDKYVGEIEILESKHVLRVDQAELETVIPQVGGRVKIVNGAYRGSIAKLLGVDTDNFCAKVQIEKGLYDGRVLEAMEYEDICKVA 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00838 401 CDD KOW_KIN17 347 400 IPR041995 -
Spst8g00838 401 FunFam DNA/RNA-binding protein KIN17, putative 345 401 - -
Spst8g00838 401 Gene3D - 291 344 - -
Spst8g00838 401 Gene3D - 345 401 IPR014722 -
Spst8g00838 401 FunFam DNA/RNA-binding protein KIN17, putative 67 166 - -
Spst8g00838 401 SMART Kin17_mid_2 58 184 IPR019447 -
Spst8g00838 401 FunFam DNA/RNA-binding protein kin17-like 291 344 - -
Spst8g00838 401 Pfam KN17 SH3-like C-terminal domain 283 336 IPR041330 -
Spst8g00838 401 Coils Coil 264 284 - -
Spst8g00838 401 PANTHER KIN17 KIN, ANTIGENIC DETERMINANT OF RECA PROTEIN HOMOLOG 7 401 IPR037321 -
Spst8g00838 401 Gene3D - 66 166 IPR038254 -
Spst8g00838 401 Coils Coil 160 192 - -
Spst8g00838 401 Pfam Domain of Kin17 curved DNA-binding protein 58 183 IPR019447 -
Spst8g00838 401 SUPERFAMILY beta-beta-alpha zinc fingers 32 72 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00838 Spst-Chr8 7531022 7532227 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00838 7 401 C2H2 Transcription Factor Family AT1G55460 68.116 0.0 566
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00838 K13102 - gmx:100785931 698.353