Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00835 ATGGCTCAACCAGGAACTGAAACTCCCCTATCTTCAACCCCAATTTGTCCATCTGAGGCCAATGCTGTCCATGAAGTTATAGGCTCTTCCTCTCACCCAAAATCACCATCATCTAAGAGGAAACGCGGTAGGCCTGTGGGCTCCAAGAACAAACCAAAACTACCACCCATTATTGACCACCACAACCACCATGCCCAAAAACCTATTTTCATTCAAGTCCCTAGAAACTCTGATGTGATTGAGGCAGTGGTCAAATTCGCTCGTGACTACCAAGTTAGTGTCACCGTGCAAAGTGCATCCGGATCTATTCTCAATGCCACTCTTCGCAACTCTCACTCTTCCACTTCTGCTTTCATTGTTCATGGACCCTTCACTTTAGTTTCCCTCACCGGCACTTGCTTATACAACAACCCTTCTGTGGTTTCATCATCATCATCATCATCATCATCATCATCTAATCGTGACCTTTGTTGTTCTTTTAGGATTTCCATTGCTTCAAATTTAGGTCAAAGCCTTATGGGGGTTGTCGGCGGCAAAGTTATTGCAGGTGATGATGTTAATGTGGCAGCTACAGTTTTCAAGAACTCTATGAATGATAATAGGGTTGGTACCAATGGTGCTGATGAGGGAGGAGATAACAACAACCTTAACAATGTCATCTAG 663 0.4404 MAQPGTETPLSSTPICPSEANAVHEVIGSSSHPKSPSSKRKRGRPVGSKNKPKLPPIIDHHNHHAQKPIFIQVPRNSDVIEAVVKFARDYQVSVTVQSASGSILNATLRNSHSSTSAFIVHGPFTLVSLTGTCLYNNPSVVSSSSSSSSSSSNRDLCCSFRISIASNLGQSLMGVVGGKVIAGDDVNVAATVFKNSMNDNRVGTNGADEGGDNNNLNNVI 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00835 220 MobiDBLite consensus disorder prediction 200 220 - -
Spst8g00835 220 Gene3D - 67 209 - -
Spst8g00835 220 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 31 198 IPR014476 GO:0003680
Spst8g00835 220 Pfam Plants and Prokaryotes Conserved (PCC) domain 67 194 IPR005175 -
Spst8g00835 220 SUPERFAMILY AF0104/ALDC/Ptd012-like 65 196 - -
Spst8g00835 220 MobiDBLite consensus disorder prediction 1 34 - -
Spst8g00835 220 CDD DUF296 67 183 IPR005175 -
Spst8g00835 220 MobiDBLite consensus disorder prediction 1 60 - -
Spst8g00835 220 ProSiteProfiles PPC domain profile profile. 63 196 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00835 Spst-Chr8 7519996 7520658 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00835 39 195 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 37.107 6.29e-22 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00835 - - var:108336502 236.113