Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00834 ATGGTTGAACCCAGTAGCGCAACTCCCCTATCCTCTCCCCCATTTTCTTCCTCTGATGAAAACACCTCCCACGGTGCTATCGAATCTTCCTCTCGATCAAAATCACCATCATCGAAGAGGAGACGCGGTAGGCCCGTGGGCTCCAAGAACAAACCAAAACTAACCCTCTTCATCAGCCAAGACCACCACCATGCCCACAAACCTATTTTCATTCAGGTCCCCAGAAACTCTGATGTGATTGGGGCACTCACCCAATTCGCGCGTGACTACCAAATTAGCATCACCGTGCTCAGTGCATCGGGATCTATTCTCAACGCCACTCTTCGCCAAAGTCACTCTCACAATTCCACTTTCATTCTTCATGGACCCTTCAATTTAGTTTCCCTCACCGGCACCTGCATAATTAACAGCCCTTGCGCTGCTTCCTCCTCCTCCTCATCTGATCTCGATTTTCATTCTTCTTTTAACATTTCTTTTTGTTCAAATTTAGGGCAAAGCTTCATTGGGGTTGTTGGAGGAAAGGTTGTGGCAGGTGATGATGTTGCTGTGGCAGCTATACTATTTTCAAGAACCGTTAAGAATCAATCATGA 591 0.4687 MVEPSSATPLSSPPFSSSDENTSHGAIESSSRSKSPSSKRRRGRPVGSKNKPKLTLFISQDHHHAHKPIFIQVPRNSDVIGALTQFARDYQISITVLSASGSILNATLRQSHSHNSTFILHGPFNLVSLTGTCIINSPCAASSSSSSDLDFHSSFNISFCSNLGQSFIGVVGGKVVAGDDVAVAAILFSRTVKNQS 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00834 196 SUPERFAMILY AF0104/ALDC/Ptd012-like 65 177 - -
Spst8g00834 196 ProSiteProfiles PPC domain profile profile. 63 196 IPR005175 -
Spst8g00834 196 MobiDBLite consensus disorder prediction 1 52 - -
Spst8g00834 196 MobiDBLite consensus disorder prediction 1 33 - -
Spst8g00834 196 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 21 190 IPR014476 GO:0003680
Spst8g00834 196 Pfam Plants and Prokaryotes Conserved (PCC) domain 67 188 IPR005175 -
Spst8g00834 196 Gene3D - 67 196 - -
Spst8g00834 196 CDD DUF296 67 132 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00834 Spst-Chr8 7516233 7516823 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00834 39 188 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 36.842 5.61e-25 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00834 - - var:108336502 212.616