Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00823 ATGGTGGGGTGGAGGGAAGAAAGAAGAGTAGATTCTGTGTGGATAAAATGCCAAAACTCAAAGTCCAAGAAGCAACCTGCAGCTATGCCTCAAGAATTCAAGGGTTTCAAGTTTTTGCGTTGCAACCAGAGTATGGAGTTTCCGAACGAAGCAATATCAGAAGGGTCTTCTCAGAAGAAAACTGGAAGAGGGAAAATAGAGATCAAGAGGATCGAGAACACCACAAATAGGCAAGTTACCTTCTGCAAACGCCGCAACGGGTTGCTCAAGAAGGCTTATGAATTGTCTGTTCTCTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCAAGCCGTGGACGCCTCTATGAGTATGCCAACAACAGTGTTAGAGGAACTATCGATAGGTACAAGAAAGCATGTGCTGCATCCTCAAATGCAGAATCTGTCTCTGAAGCTAATACACAGTTTTATCAGCAGGAATCATCCAAGTTAAAAAGACAAATCAGAGACATTCAGAATCTAAACAGGCACATCCTTGGTGAAGCTCTTAGCTCTCTGAGTCTAAAGGAATTAAAGAACCTTGAGAGTAGATTGGAGAAAGGTTTGAGCAGAGTCAGATCCAGAAAGCATGAAACATTGTTTGCCGATATCGAGTTCATGCAAAAGCGGGAAATAGAGCTGCAAAACCACAATAATTTTCTGCGAGCTAAGATAGCTGAACACGAGAGAGCACAACAACAACATATGACAGGAAGTGTGTGCGAGTCCTTACCACATTCACAATCATATGACAGGAATTTCTTCCCTGTAAATCTCATAGATTCCAATCATCAATACTCACGTCAAGACCAGACTGCTCTTCAACTTGTGTAA 852 0.4225 MVGWREERRVDSVWIKCQNSKSKKQPAAMPQEFKGFKFLRCNQSMEFPNEAISEGSSQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIDRYKKACAASSNAESVSEANTQFYQQESSKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREIELQNHNNFLRAKIAEHERAQQQHMTGSVCESLPHSQSYDRNFFPVNLIDSNHQYSRQDQTALQLV 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00823 283 ProSiteProfiles MADS-box domain profile. 61 121 IPR002100 GO:0003677|GO:0046983
Spst8g00823 283 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 70 117 IPR002100 GO:0003677|GO:0046983
Spst8g00823 283 Gene3D - 73 142 IPR036879 GO:0003677|GO:0046983
Spst8g00823 283 FunFam agamous-like MADS-box protein AGL11 73 156 - -
Spst8g00823 283 SUPERFAMILY SRF-like 62 136 IPR036879 GO:0003677|GO:0046983
Spst8g00823 283 CDD MADS_MEF2_like 62 138 IPR033896 GO:0000977|GO:0045944
Spst8g00823 283 ProSiteProfiles K-box domain profile. 147 237 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst8g00823 283 SMART madsneu2 61 120 IPR002100 GO:0003677|GO:0046983
Spst8g00823 283 PRINTS MADS domain signature 98 119 IPR002100 GO:0003677|GO:0046983
Spst8g00823 283 PRINTS MADS domain signature 63 83 IPR002100 GO:0003677|GO:0046983
Spst8g00823 283 PRINTS MADS domain signature 83 98 IPR002100 GO:0003677|GO:0046983
Spst8g00823 283 PANTHER SERUM RESPONSE FACTOR HOMOLOG 63 241 - -
Spst8g00823 283 ProSitePatterns MADS-box domain signature. 63 117 IPR002100 GO:0003677|GO:0046983
Spst8g00823 283 Pfam K-box region 145 231 IPR002487 GO:0003700|GO:0005634|GO:0006355
Spst8g00823 283 Coils Coil 150 170 - -
Spst8g00823 283 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00823 Spst-Chr8 7425232 7435651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00823 54 283 MADS-box Gene Family AT3G58780 69.167 3.16e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Spst8g00823 K-box 2.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00823 K09264 - gmx:100792224 409.838