Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00784 ATGGATGTGGCCAAGTTACATAACTCTGATGATAATGAGGACAAGAAAGAAGATGAAGTTGTGCTTCCTGGATTTAGATTCCATCCAACAGATGAAGAACTTGTGGGGTTTTATCTGACTCGAAAGGTGGAGAAGAAACCTCTCAGAATTGAACTCATCAAACAGATTGACATCTACAAATATGATCCTTGGGATCTTCCAAAAGCAAGTTCAGTGGGGGAGAAGGAATGGTACTTTTTCTGCATAAGAGGGAGAAAGTATCGGAACAGCATAAGGCCAAATAGAGTAACAGGGTCTGGATTTTGGAAAGCCACAGGGATTGATAAGCCTATATACAGTGTTAAAGAACCCCATGAATGCATCGGTCTGAAGAAATCATTGGTGTATTACCGTGGAAGTGCTGGAAAAGGCACCAAAACTGACTGGATGATGCACGAGTTTCGCCTCCCACCCAATGGAAATTCCACCATTAATCCAACACCTGATCATCTTCAAGAAGCTGAAGTGTGGACGCTATGCAGAATATTCAAACGAGTCCCATCTTACAAGAAGTACACACCAAATTTGAAAGACTCAGCAACAATCACGAAACCGAACCCCACAAACTCTTCAAGTTCCAAAACATGCAGCTTAGAATCTGACAACAGCAAGCCATACTTGACTTTCACAAACTCACCATCATCGCTGCTCCTTCATCAAAACGACCACCAACATAACCACATACTTCTAGGCCATGTTCCTCAGCCTCCAACATCCTTGTCTTACTCAACTTTTTGGACCCATCAGAATCTGGAATTTGCTAACGAGAATTGGGATGATCTCACATCTGTGGTTCAGTTTGCTGTTGATCCATCCAGGGTTTCTGATCATTGTAAATAG 879 0.4232 MDVAKLHNSDDNEDKKEDEVVLPGFRFHPTDEELVGFYLTRKVEKKPLRIELIKQIDIYKYDPWDLPKASSVGEKEWYFFCIRGRKYRNSIRPNRVTGSGFWKATGIDKPIYSVKEPHECIGLKKSLVYYRGSAGKGTKTDWMMHEFRLPPNGNSTINPTPDHLQEAEVWTLCRIFKRVPSYKKYTPNLKDSATITKPNPTNSSSSKTCSLESDNSKPYLTFTNSPSSLLLHQNDHQHNHILLGHVPQPPTSLSYSTFWTHQNLEFANENWDDLTSVVQFAVDPSRVSDHCK 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00784 292 Gene3D NAC domain 30 181 IPR036093 GO:0003677|GO:0006355
Spst8g00784 292 Pfam No apical meristem (NAM) protein 23 149 IPR003441 GO:0003677|GO:0006355
Spst8g00784 292 ProSiteProfiles NAC domain profile. 21 178 IPR003441 GO:0003677|GO:0006355
Spst8g00784 292 FunFam NAC domain-containing protein 35 30 181 - -
Spst8g00784 292 SUPERFAMILY NAC domain 20 177 IPR036093 GO:0003677|GO:0006355
Spst8g00784 292 MobiDBLite consensus disorder prediction 188 212 - -
Spst8g00784 292 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00784 Spst-Chr8 7153820 7155987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00784 3 179 NAC Transcription Factor Family AT5G39820 59.375 4.46e-77 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst8g00784 NAM 5.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00784 - - gmx:100784323 488.804