Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00775 ATGGATAACTCAAATGATTCATCATCATCCTTGAGTTTTGTATCATCTCACCTCTCACATGGTTCTAGTAATCACAACGTATCTTCCTCCACCAGCATTGAGCATGGGACAAATATTGAAATTTTGAGCCTGAGTAAGCTCAGTGGAAGCCTTGAGAAGCTACTGATTGATGCTGAGAATGATTATTGTGATGCTGAGATTCTCGTTGAAGACATCTGTGTGGGTATTCACCGCTGTATATTAGCCTCGCGCAGTCCCTTTTTTCATGAGCTTTTTAAGAAAGGAACTGATGGATCGGGGAAGGAAGGAAAGCCAAGGTATCTCATGTCTGAATTGGTGCCTTATGGCGCAGTTGGATATGAAGCTTTCCAAGTTTTCTTGTACTATTTGTATACTGGAAGGCTAAAAGCTTCACCAACAGAAGTGATAACATGTGTTGATGAAACATGTATCCATGATGCATGTCGCCCTGCTATCAATTATTCCTTGGAGCTGATGTATGCTTCTGCCACTTTTCAGATGAAAGAGCTGGTTTTAGTCTTTCAGCGGCAACTCCTAAACTTTGTTGAGAAGGCTCTTGTGGAAGATGTCATTCCTATTCTTATGGCTTCTTTCAACTTCCAACTAGACCAGCTTCTCTCTCGGTGCATTCACAGAGTAGCAAGGTCTGACTTTGACAACATATCTTTGGAAAAAGAGCTGCCTCATGAAGTTGTGACTGAAATCAAATCGCACCGACTCTCATCTCTGCCAGAATCCTCAGATGATGCATTGGAAGTGGAGCCTTTGAGTGAAAAGAGTATCAAGAAAATCCATAAAGCATTGGACTCTGATGATGTTGAGCTACTGAAGCTTCTTCTAAATGAGTCCAGGGTCACCCTAGATGATGCATATGCCCTGCACTATGCCTGTGCCTATAGTGATTCTAAGGTTATTCAAGAAGTTCTTGGTCTAGGCATGGCTGATATTCTTCGTAGAAATTCCCGAGGATACACAGTTCTTCATGTGGCTGCAAGGCGAAAGGATCCATCCATTTTGGTTTCACTGCTGAATAAAGGGGCATGTGCAACAGATACCACTCCAGATGGACAGACTGCTCTTTCAATTTGTCAGAGGTTGACGAGACGCAAGGATTATCATGAGAAAACAGTGCGGTGTAAGGAATCTAACAAGGACAGGCTCTGTGTTGATGTCCTGGAGAGGGAGATGAGAAGAAGTTCTATGACTGTGAGTATGTCTGTTTCATCACAGTTAACAGCTGATGATTTGCACATGAGACTGGATTATCTTGAAGATAGAGTTACATTTGCTCGGTTGTTGTTTCCTGCTGAGGCTAGGGTAGCCATTGAGAATGCTGAGGCAGATTCGTCATCACTGTACGCAAACTCACCTTTAAAGGGCACAAATGACAAACTTAAAGAAGTAGATTTAAATGAATCTCCCTCTGCTCGAACCAGAAAACTTCAGTTAAGATTGCATGCCCTTATGAAAACAGTTGAGAATGGTAGGCGGTTCTTTCCCCATTGTTCTGAAGTGCTTGATAAGTTTCTGGAAGATGATATGCCAGATGTGTTCTTCCTAGAGAAGGGCACTGAAGAAGAGCAGAAAATGAAGAAAGCACGCTTCATGGAACTTAAAGATGATGTGCAGAAAGCATTTCACAAAGATATGGCTGAAAATAACCATACAGCTTTTTCATCTTCAGTATCCTCCTCATCATCTTCAACTCGGAGGGAAGGTCTTAACCACAGAGTGAGGAAAAAATGA 1767 0.4216 MDNSNDSSSSLSFVSSHLSHGSSNHNVSSSTSIEHGTNIEILSLSKLSGSLEKLLIDAENDYCDAEILVEDICVGIHRCILASRSPFFHELFKKGTDGSGKEGKPRYLMSELVPYGAVGYEAFQVFLYYLYTGRLKASPTEVITCVDETCIHDACRPAINYSLELMYASATFQMKELVLVFQRQLLNFVEKALVEDVIPILMASFNFQLDQLLSRCIHRVARSDFDNISLEKELPHEVVTEIKSHRLSSLPESSDDALEVEPLSEKSIKKIHKALDSDDVELLKLLLNESRVTLDDAYALHYACAYSDSKVIQEVLGLGMADILRRNSRGYTVLHVAARRKDPSILVSLLNKGACATDTTPDGQTALSICQRLTRRKDYHEKTVRCKESNKDRLCVDVLEREMRRSSMTVSMSVSSQLTADDLHMRLDYLEDRVTFARLLFPAEARVAIENAEADSSSLYANSPLKGTNDKLKEVDLNESPSARTRKLQLRLHALMKTVENGRRFFPHCSEVLDKFLEDDMPDVFFLEKGTEEEQKMKKARFMELKDDVQKAFHKDMAENNHTAFSSSVSSSSSSTRREGLNHRVRKK 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00775 588 SUPERFAMILY Ankyrin repeat 270 372 IPR036770 -
Spst8g00775 588 FunFam Regulatory protein NPR3 37 221 - -
Spst8g00775 588 SMART ANK_2a 329 358 IPR002110 GO:0005515
Spst8g00775 588 SMART ANK_2a 295 325 IPR002110 GO:0005515
Spst8g00775 588 Gene3D Potassium Channel Kv1.1; Chain A 33 221 IPR011333 -
Spst8g00775 588 Gene3D - 263 403 IPR036770 -
Spst8g00775 588 ProSiteProfiles Ankyrin repeat region circular profile. 329 354 - -
Spst8g00775 588 SUPERFAMILY POZ domain 55 187 IPR011333 -
Spst8g00775 588 Pfam Domain of unknown function (DUF3420) 224 272 IPR024228 -
Spst8g00775 588 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 236 393 - -
Spst8g00775 588 PANTHER REGULATORY PROTEIN NPR3 22 579 IPR044292 GO:0009862|GO:2000022|GO:2000031
Spst8g00775 588 Pfam NPR1/NIM1 like defence protein C terminal 371 572 IPR021094 -
Spst8g00775 588 SMART BTB_4 63 189 IPR000210 GO:0005515
Spst8g00775 588 Pfam Ankyrin repeats (many copies) 321 369 IPR002110 GO:0005515
Spst8g00775 588 MobiDBLite consensus disorder prediction 554 588 - -
Spst8g00775 588 MobiDBLite consensus disorder prediction 560 578 - -
Spst8g00775 588 Pfam BTB/POZ domain 59 140 IPR000210 GO:0005515
Spst8g00775 588 CDD BTB_POZ_NPR_plant 52 189 - -
Spst8g00775 588 ProSiteProfiles BTB domain profile. 63 139 IPR000210 GO:0005515
Spst8g00775 588 ProSiteProfiles Ankyrin repeat profile. 329 354 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00775 Spst-Chr8 7067590 7071042 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Spst8g00775 NPR1_like_C 2.4e-83 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00775 K14508 - gmx:100814739 946.806