Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00763 ATGTTGAAAGCAAACGAGCTAGACCAAGAACTTGTAGAGCTCTTATGGCAAAATGGGCAAGTAGTTATGCACAGCCCAACACATAGGAAGCTACTTGGGAATTCATCTAACTCGAGACAGATGCAGAGAAATGATCGATCAACATTAAGGGCTGGTGGGACATATGGGAAATCAAGCAACTTGGATCAAGAAGAGGCAGCACCATGGATCCAATACCCACTTGAGAACCCTTTGGAACAAGAATTTTGTTCAAACATTTTATCTGAGCTACCACCGCCTTGTGAAGTTGACTCTTATTACAAGTCAATCAGGCAATTGGAAGAGGAAAAGTTTGCCAAATTTGTTTCCCCTAGTGCCCCCCATCATCCTACTTCATATTCTCAACCACTACTATCTAACATGAAACCCTCCTGTGTTCAGGGACTCCTAGGGAATCTTATGCCCGCACCAAGATTTCATGTTCCTGATTCAAATCAGAAAATCAGTGACTTTGGTGCATCACGGAGGGTGCTAAATTTTACTCACTTTTCAACACCCTGTAATGTTTCTTCACCATCTCAAAAAATTAATGCTAACCTCTCACAAAGTGAGGCTAGAGAGCACTCAGTGATCACAGTTGGTTCAAGTCACTGTGGCAGCAATCACATCCCTCAGGACCAAGATGTAAGCAGGGTCTCAAGCAGTGGTGTTTCGGCCACCACCAATAATACTACTTTATTTACTGAGCCCGAAGCTGTAGATATTGTCCAGAGACCAATTCCTCGGAGTGAGAAAGGAAAATCAGAGATGATTGAACCAACTGTAACTTCATCCTCCGGTGGCTTAGGCAGCTGTACTGGTATTGGAAGAACTTGTTCCCTATCAACAAGAGACCATGGCCAAAAGAGAAAAGGGACAGAAGAAGAAGCATCAGAGGAACAAAGTGAGGCCACAGAACTTAAATCAGCTGATGGAAACAAGTTATCTCAGAGGACGGGGTCTTCCAGAAGGAGCCGTGCAGCTGAAGTGCATAATCTATCAGAAAGGAGAAGAAGAGATAGGATTAACGAGAAGATGAGAGCATTGCAGCAACTGATACCTAACAGCAACAAGGTACAGACAGACAAAGCATCAATGTTAGACGAGGCAATAGAATACTTGAAATCGCTTCAGTTTCAGCTTCAGGTTATGTGGATGGGGGCTGGCATGACACCAGTGATGTTTCCAGGAATTCAGCAGTATATGTCACAGATGGGGATGGGAATTGGTCGACCTTCTTTGCCTTCCATTCACAACCCAATGCAGTCACCAAAAGTGCCACATGATCAAGCCATGTCTGTGCCTCAGATGCCAAACCAGAATTTAATGTGCCAAAATCCAGTTTTGGGTGTCTTCAATTACCAAAACCAGATGCAAAACCCATGCCTTTCAGAACAATATGCACGTTACATGGGTTACCATCTCATGCAAAGTGCCTCTCAGCCGATGAATGTGTTGAGATATGGTTCCCAAGCAACGCAACAGAGAGAAACAATGATTGCAGAAGGCAATAATAGCAGCGGACCCATGAGTGGAACAGCTAATATCAATGATGCTGTTAGTGGCAAAACGGGTTCTTCTACCTTTAACTGA 1611 0.4389 MLKANELDQELVELLWQNGQVVMHSPTHRKLLGNSSNSRQMQRNDRSTLRAGGTYGKSSNLDQEEAAPWIQYPLENPLEQEFCSNILSELPPPCEVDSYYKSIRQLEEEKFAKFVSPSAPHHPTSYSQPLLSNMKPSCVQGLLGNLMPAPRFHVPDSNQKISDFGASRRVLNFTHFSTPCNVSSPSQKINANLSQSEAREHSVITVGSSHCGSNHIPQDQDVSRVSSSGVSATTNNTTLFTEPEAVDIVQRPIPRSEKGKSEMIEPTVTSSSGGLGSCTGIGRTCSLSTRDHGQKRKGTEEEASEEQSEATELKSADGNKLSQRTGSSRRSRAAEVHNLSERRRRDRINEKMRALQQLIPNSNKVQTDKASMLDEAIEYLKSLQFQLQVMWMGAGMTPVMFPGIQQYMSQMGMGIGRPSLPSIHNPMQSPKVPHDQAMSVPQMPNQNLMCQNPVLGVFNYQNQMQNPCLSEQYARYMGYHLMQSASQPMNVLRYGSQATQQRETMIAEGNNSSGPMSGTANINDAVSGKTGSSTFN 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00763 536 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 332 383 IPR011598 GO:0046983
Spst8g00763 536 MobiDBLite consensus disorder prediction 29 60 - -
Spst8g00763 536 MobiDBLite consensus disorder prediction 211 235 - -
Spst8g00763 536 PANTHER TRANSCRIPTION FACTOR PIF3 8 497 IPR044273 GO:0003700|GO:0006355
Spst8g00763 536 MobiDBLite consensus disorder prediction 251 347 - -
Spst8g00763 536 MobiDBLite consensus disorder prediction 314 329 - -
Spst8g00763 536 MobiDBLite consensus disorder prediction 263 288 - -
Spst8g00763 536 CDD bHLH_AtPIF_like 332 397 IPR047265 -
Spst8g00763 536 Pfam Helix-loop-helix DNA-binding domain 336 384 IPR011598 GO:0046983
Spst8g00763 536 MobiDBLite consensus disorder prediction 289 313 - -
Spst8g00763 536 Coils Coil 296 316 - -
Spst8g00763 536 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 329 397 IPR036638 GO:0046983
Spst8g00763 536 MobiDBLite consensus disorder prediction 330 347 - -
Spst8g00763 536 SMART finulus 338 389 IPR011598 GO:0046983
Spst8g00763 536 MobiDBLite consensus disorder prediction 508 536 - -
Spst8g00763 536 FunFam Basic helix-loop-helix transcription factor 327 392 - -
Spst8g00763 536 Gene3D - 327 390 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00763 Spst-Chr8 7008481 7014875 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00763 10 501 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 34.059 1.20e-51 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst8g00763 HLH 1.9e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00763 K16189 - gmx:100811777 816.224
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02461 6 56330272 56332781 Spst8g00763 8 7008481 7014875 PCT