Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00755 CAGCCGAAAAGGCACCTTCTCACTACAGGTTGGAGTGTCTTTGTCAGTGCAAAGAGGCTTGTTGCTGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAATCAATTACTCTTGGGCATACGGCGAGCAAATCGTCCACAGACTATCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCCACAAACAGCCGCTTTACTATATTCTATAATCCTAGGGCAAGCCCATCTGAATTTGTCATTCCTTTGGCCAAGTATGTTAAAGCAGTGTATCATACACGAGTTTCTGTTGGCATGCGATTTAGAATGCTGTTTGAGACAGAAGAATCAAGTGTTCGTCGATACATGGGTACCATTACTGGTATTAGTGATTTAGATCCGGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGCGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCTTTGACAACATTCCCGATGTATCCGTCTCCATTTCCCTTAAGGTTGAGGCGTCCTTGGCCAACAGGCCTACCTTCTTTATATGGTCTCAAGGATGGAGACATGGGCATTGGTTCTCCATTCATGTGGCTCCAAGGTGGCCTTGGGGATCAAGGAATGCAATCTTTAAACTTCCAGGGGCTCGGTGTTACACCATGGATGCAACCTAGACTTGACGCATCTATTCCTGGTCTCCAACCAGAGTTGTACCAAGCAATGACTTCTTCTGCATTCCAGGAAATGAGGACAATGGACCCTTCAAAATCTTCCCAATCTCTGTTGCAGTTTCAGCAGACCTCAAATGTCCCCAGTGCTAATACATCTGAGGTACAGAGGCAAGTATTACCACCGCCTCATCCTCAAAGCACCCTTCTTCAAAATTTTCAAGAAAACCAAGTGCCTGGTCAGTCACAACTTCTGCAACAGCAGTTGCATCGTTACCACCCATACAGTGATCAGCGGCAACAGCAACTGAAAAATTTGCCTATTCAGCAGTTACCGAGTGTCATCTCTCCTTTGTCTAATTTTGCATCAGGTACCCAGTCTCAATCTCCTCCCATGCAAGCTCTTGCTACGCATTGCCAGCAGCAGAGTTTTCCTGAACCTATCAGGAATCATATTTCTGGTTCTGATGTTTCCCCTATCCAGAGTCTACTAGGTTCGTTCTCCCAGGATGGAACATCCCAGTTACTTAACTTGAATGGATCCAACTCGGTTATGTCTTCTGCATCCATCCTACCCAAGCAAATGACAGTTGAACCTCAGCTTCCCTCTGCTGCTGCTCAGTGCGTATTGCCTCAGGTGGAAAACTTGGGAACATCGCAATCAAATGTGTCTGAACTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATACCATGGTGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGATCCCTCTTCTCTTATGCTGCAAAATGGCATGTCAAACCTGAGAAATATAGGCAACGTGAATGATTCATTATCATTGCCATTTTCTGCTTCAAATTGTGGTGGTGCTACAGGCACTGATTTCCCCTTAAGTTCAAACATGACAACTTCGAGTTGTGTGGATGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAACACACCAACTGGAACCTTTGTTAAGGTTCACAAGTCAGGGTCCTTTGGCAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAACTGCGTAGTGAGCTTGCTCGGATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTTCTGGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATAAAAATACTATCTCCACTAGAAGTGCAGCAAATGGGCAAAGGTGTTAGTCCTTCTACTTCTGCCCCAGGTCACAAACTTTCAACCTCTGGCAACTCTTGTGATAATTATGTGAGTCAACAAGAGTTGAGAAGTTCCAGAAATGGCATGGCATCAATGGGGTCTTTTCACTACTAG 2118 0.4566 QPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPTGLPSLYGLKDGDMGIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPRLDASIPGLQPELYQAMTSSAFQEMRTMDPSKSSQSLLQFQQTSNVPSANTSEVQRQVLPPPHPQSTLLQNFQENQVPGQSQLLQQQLHRYHPYSDQRQQQLKNLPIQQLPSVISPLSNFASGTQSQSPPMQALATHCQQQSFPEPIRNHISGSDVSPIQSLLGSFSQDGTSQLLNLNGSNSVMSSASILPKQMTVEPQLPSAAAQCVLPQVENLGTSQSNVSELAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGMSNLRNIGNVNDSLSLPFSASNCGGATGTDFPLSSNMTTSSCVDESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKGVSPSTSAPGHKLSTSGNSCDNYVSQQELRSSRNGMASMGSFHY 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00755 705 ProSiteProfiles B3 DNA-binding domain profile. 1 44 IPR003340 GO:0003677
Spst8g00755 705 SUPERFAMILY DNA-binding pseudobarrel domain 2 71 IPR015300 -
Spst8g00755 705 Pfam Auxin response factor 68 151 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Spst8g00755 705 Pfam AUX/IAA family 558 653 IPR033389 -
Spst8g00755 705 Gene3D - 565 660 - -
Spst8g00755 705 FunFam Auxin response factor 564 660 - -
Spst8g00755 705 Pfam B3 DNA binding domain 2 43 IPR003340 GO:0003677
Spst8g00755 705 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 661 IPR044835 GO:0003677|GO:0006355|GO:0009725
Spst8g00755 705 MobiDBLite consensus disorder prediction 266 308 - -
Spst8g00755 705 FunFam Auxin response factor 106 178 - -
Spst8g00755 705 SUPERFAMILY CAD & PB1 domains 562 645 - -
Spst8g00755 705 Gene3D - 106 178 - -
Spst8g00755 705 MobiDBLite consensus disorder prediction 660 683 - -
Spst8g00755 705 Gene3D - 1 43 IPR015300 -
Spst8g00755 705 ProSiteProfiles PB1 domain profile. 569 655 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00755 Spst-Chr8 6963090 6967638 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00755 1 660 B3 DNA Binding Superfamily AT5G37020 50.149 1.54e-176 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Spst8g00755 AUX_IAA 7.8e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00755 - - gmx:100810798 1306.58