Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00748 ATGGATGATGCGTCGTTTTCATCCAATCAGGTAAACAGTGTCACGGATTTCAAAAATATTCAAACTGGTCCACATTTTGGAGAGAGGTGTTCCCAGCAACACTGTCTCAAAAGAAGAATCGATGCCTTAACTTGTAAGCCAGTTATCCCAAAAATGGGAACTCCAACTCCTGGCCTTGTACTTGTACTACTCCTTTTGTGCTTGGCCTGGCCTGTTTCTGTTTCCTCTCTTCCCATGTCTTTGAGAAGGCAAGCCTCTATCCTGGTTTCCCTCAAACAATATTTTGAGGCCAACACTGATTCTCTGAGAAGCTGGGACGTGACTAACTACATGTCTCTTTGCACTTGGGAGGGCATTGAGTGTGACCAAAATAATAGGTCTGTGGTTTCATTGGACATATCCAATCTCAACCTTTCTGGCACAATTTCACCTTCCATCACAGGACTCAGGAGCCTTGTGAGTGTTTCACTTGCTGGGAATGGCTTCTCAGGAGGGTTCCCTAGTGATATTCACAAGCTGGCAGGGCTGAGATTCCTCAACATATCAAACAACATGTTCAGTGGAGACATGAGTTGGGAGTTCTCTATGTTGAAAGAGCTAGAGGTGCTCGATGCTTACAATAACAACTTCAATTGCTCCCTCCCTCTTGGTGTCACTCAACTCCCCAAGCTCAATAGCTTGAATTTTGGCGGGAATTATTTCTACGGTGAGATCCCTCCAAGCTATGGAGACATGGTTCAGCTCAACTTTCTGTTTCTTGCCGGAAATGATTTGAGGGGTCTCATACCATCTGAGCTTGGAAATCTCACTAACCTGACACAGCTTTTCTTGGGATACTACAATCAGTTTGATGGTGGAATCCCTCCTCAGTTTGGTAAGTTGGTTAATTTGGTTCATCTTGACCTTGCAAATTGTGGTTTGACAGGTCCAATTCCATCTGAGTTGGGAAATCTCAACAAATTAGACACTCTCTTTTTGCAAACTAACCAGCTCAGTGGCTCGATCCCTCCCCAACTGGGCAACATGAGTAGCCTGAAGTGTCTTGACCTGTCATATAATGAGCTTACAGGAGACATCCCCAATGAGTTCTCAGGCCTTCACCAGCTCACCCTCTTGAACTTGTTCATCAACAGGTTGCATGGTGAAATTCCACCTTTCATTGCGGAGCTACCTAACTTGGAAGTGCTGAAGCTTTGGCAAAACAACTTCACAGGTGCAATTCCCTCAAGACTTGGCCAAAATGGTAAATTGACTGAGCTTGACTTGTCAACTAACAAACTCACTGGATTGGTGCCTAAATCTCTATGCCTTGGAAGAAGGCTGAGGATTTTGATCCTGCTCAACAATTTTCTCTTTGGTTCTTTGCCGGGTGATCTTGGCCAATGCTACACACTCCAAAGAGTTCGTTTGGGACAAAACTATTTGACAGGATCAATACCAAATGGTTTCCTTTACTTGCCTGAGTTGGCTCTTTTAGAATTGCAGAACAATTACCTCAGTGGTTGGCTTTCACAAGAGACGAACACTGCACCCTCTAAACTTGGACAGTTGAATCTATCAAACAATCGCCTATCCGGGTCTCTACCAACCTCTATTGGAAACTTTCCCAACTTGCAAATTATGTTGCTTCACGGAAATAGACTCTCAGGAGAAATCCCTCCAGATATAGGGAGGTTAAAAAATATACTCAAGTTAGATATGAGTGTCAACAACTTCTCAGGAACCATTCCTCCAGAGATAGGTAACTGTTTGTTGCTCACCTATTTAGATTTGAGCCAAAACCAACTATCAGGCCCTATCCCAGTTCAGCTTTCTCAAATTCACATAATGAACTATCTCAATGCCTCATGGAACCACCTAAACCAAAGTCTTCCCCAGGAACTTGGGGCCATGAAGGGCTTGACTTCAGCAGATTTTTCTCACAATGACTTCTCTGGTTCAATACCGGAGGAGGGGCAATTTTCTGTATTTAACTCTACATCCTTTATTGGGAATCCTCAGCTCTGTGGATATGAGTTGAATCCGTGTAAACATTCCTCAAATTCAGTATTGGAGTCCCAAGACAGGGGCAGTGCGAAGCCTGGTGTTCCTGGGAAGTATAAGCTTCTTTTTGCAGTGGCACTGTTGGCTTGTTCATTGGCATTTGCAACCTTGGCCTTTATCAAAAGTAGAAAGCAAAGGAGGCACTCCAATTCATGGAAGCTCACATCATTTCAGAAACTGGAATATGGAAGTGAAGACATCATAGGGTGCATAAAGGAAAGCAATGTCATAGGAAGGGGAGGAGCTGGGGTTGTATACCACGGAACCATGCCAAATGGAGAGCAAGTAGCCGTGAAGAAGCTGTTGGGAATCAGCAAAGGATGTTCTCATGATAATGGTCTCTCTGCAGAAATAAGGACACTGGGGAGAATCAGGCACAGGTACATTGTGAGGTTGCTGGCTTTTTGCTCAAATAGAGAGACCAATTTGCTTGTTTATGAGTACATGCCAAATGGAAGCTTGGGAGAGGTCTTGCATGGGAAAAGGGGAGAGTTTCTCAAATGGGATACCAGGCTGAAAATAGCAACAGAAGCTGCAAAAGGGCTTTGTTATTTGCACCATGATTGTTCCCCTCTGATAATCCACAGAGATGTGAAGTCGAACAACATATTATTGAACTCTGAATTTGAGGCTCATGTTGCTGATTTTGGACTTGCCAAGTTCTTGCAAGATACTGGGACATCAGAGTGCATGTCATCCATTGCTGGTTCTTATGGTTACATAGCTCCAGAATATGCATACACTTTGAAAGTTGATGAGAAAAGTGATGTCTATAGCTTTGGAGTGGTGCTGCTAGAGCTACTAACTGGGAGAAGGCCAGTGGGGAATTTTGGGGAAGAAGGACTAGACATTGTTCAATGGGCCAAGTTGCAAACAAATTGGAGCAAAGAGGGAGTGGTGAAGATTCTTGATGAGAGGCTGTGTCACATTCCCTTAGATGAAGCAAAGCAGGTATACTTCGTGGCCATGCTATGTGTCCAGGAGCAAAGTGTGGAGAGACCAACCATGAGGGAAGTGGTTGAAATGCTTGCACAAGCAAAGCAACCAAACACATTCCAAAAGCACTGA 3111 0.4404 MDDASFSSNQVNSVTDFKNIQTGPHFGERCSQQHCLKRRIDALTCKPVIPKMGTPTPGLVLVLLLLCLAWPVSVSSLPMSLRRQASILVSLKQYFEANTDSLRSWDVTNYMSLCTWEGIECDQNNRSVVSLDISNLNLSGTISPSITGLRSLVSVSLAGNGFSGGFPSDIHKLAGLRFLNISNNMFSGDMSWEFSMLKELEVLDAYNNNFNCSLPLGVTQLPKLNSLNFGGNYFYGEIPPSYGDMVQLNFLFLAGNDLRGLIPSELGNLTNLTQLFLGYYNQFDGGIPPQFGKLVNLVHLDLANCGLTGPIPSELGNLNKLDTLFLQTNQLSGSIPPQLGNMSSLKCLDLSYNELTGDIPNEFSGLHQLTLLNLFINRLHGEIPPFIAELPNLEVLKLWQNNFTGAIPSRLGQNGKLTELDLSTNKLTGLVPKSLCLGRRLRILILLNNFLFGSLPGDLGQCYTLQRVRLGQNYLTGSIPNGFLYLPELALLELQNNYLSGWLSQETNTAPSKLGQLNLSNNRLSGSLPTSIGNFPNLQIMLLHGNRLSGEIPPDIGRLKNILKLDMSVNNFSGTIPPEIGNCLLLTYLDLSQNQLSGPIPVQLSQIHIMNYLNASWNHLNQSLPQELGAMKGLTSADFSHNDFSGSIPEEGQFSVFNSTSFIGNPQLCGYELNPCKHSSNSVLESQDRGSAKPGVPGKYKLLFAVALLACSLAFATLAFIKSRKQRRHSNSWKLTSFQKLEYGSEDIIGCIKESNVIGRGGAGVVYHGTMPNGEQVAVKKLLGISKGCSHDNGLSAEIRTLGRIRHRYIVRLLAFCSNRETNLLVYEYMPNGSLGEVLHGKRGEFLKWDTRLKIATEAAKGLCYLHHDCSPLIIHRDVKSNNILLNSEFEAHVADFGLAKFLQDTGTSECMSSIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELLTGRRPVGNFGEEGLDIVQWAKLQTNWSKEGVVKILDERLCHIPLDEAKQVYFVAMLCVQEQSVERPTMREVVEMLAQAKQPNTFQKH 1036
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00748 1036 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 126 249 - -
Spst8g00748 1036 Gene3D Phosphorylase Kinase; domain 1 720 829 - -
Spst8g00748 1036 SUPERFAMILY L domain-like 359 678 - -
Spst8g00748 1036 FunFam leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 isoform X1 284 386 - -
Spst8g00748 1036 SUPERFAMILY RNI-like 130 452 - -
Spst8g00748 1036 Gene3D Transferase(Phosphotransferase) domain 1 830 1036 - -
Spst8g00748 1036 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 721 829 - -
Spst8g00748 1036 Gene3D Ribonuclease Inhibitor 416 680 IPR032675 -
Spst8g00748 1036 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 394 680 - -
Spst8g00748 1036 ProSiteProfiles Protein kinase domain profile. 752 1036 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00748 1036 Pfam Protein tyrosine and serine/threonine kinase 754 1024 IPR001245 GO:0004672|GO:0006468
Spst8g00748 1036 Pfam Leucine Rich Repeat 296 318 IPR001611 GO:0005515
Spst8g00748 1036 Gene3D Ribonuclease Inhibitor 338 415 IPR032675 -
Spst8g00748 1036 ProSiteProfiles Leucine-rich repeat profile. 416 437 IPR001611 GO:0005515
Spst8g00748 1036 SMART LRR_typ_2 535 559 IPR003591 -
Spst8g00748 1036 SMART LRR_typ_2 390 414 IPR003591 -
Spst8g00748 1036 SMART LRR_typ_2 415 437 IPR003591 -
Spst8g00748 1036 SMART LRR_typ_2 245 268 IPR003591 -
Spst8g00748 1036 SMART LRR_typ_2 294 318 IPR003591 -
Spst8g00748 1036 SMART LRR_typ_2 342 365 IPR003591 -
Spst8g00748 1036 SUPERFAMILY Protein kinase-like (PK-like) 746 1024 IPR011009 -
Spst8g00748 1036 Gene3D Ribonuclease Inhibitor 81 237 IPR032675 -
Spst8g00748 1036 Gene3D Ribonuclease Inhibitor 238 337 IPR032675 -
Spst8g00748 1036 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 830 1036 - -
Spst8g00748 1036 Pfam Leucine rich repeat N-terminal domain 84 122 IPR013210 -
Spst8g00748 1036 SMART serkin_6 752 1024 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00748 1036 ProSitePatterns Serine/Threonine protein kinases active-site signature. 874 886 IPR008271 GO:0004672|GO:0006468
Spst8g00748 1036 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 83 193 - -
Spst8g00748 1036 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 194 281 - -
Spst8g00748 1036 Pfam Leucine rich repeat 320 379 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00748 Spst-Chr8 6899261 6907233 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00748 74 1026 Receptor kinase-like Gene Family AT5G65700 58.516 0.0 1105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst8g00748 PK_Tyr_Ser-Thr 1.3e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00748 - - gmx:100816158 1810.42