Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00746 ATGGCTTTCTTCAGGAACTTTTCAAATGATACCGTCTCACATGGTGTCATGGAAGATAAAAGCCAAGGACAGAATGCTAATAGAACTCATAGATCAGTAGGTAATGAATGTACTGATGCAATTTCTAGCGAGAAAGAATTTGATATGAACATGGAAGCACAGTATGAGAGTGATGGCGAACCAGATGGTTCCAGTAGACTACAAACTGAGGCAACAGTTGATGATGGAGATGCTGTGAAAGAATCAAACTTGCAGACTGCTGGTAGTAAAACAGCTATGATGGGAAGGTGGGGTACAACTTTTTGGAAGGACTGCGGGCAAATGGGCCCTCAAAATGGTTCCGAATCTGGGCAGGAATCAAAAAGTGGATCAGATTATAGAAATGCGGATGGGTCTGAAGATAATTCATTGGATGGAAGAGCAGGAAGATTAGACTCAGATGATGATGATGGTCAAAAGGAGGCAGGAAAAGGTCCAAGAGGTCACTCTGATGTACCTGCTGAAGAGATGTTGTCTGATGAGTATTATGAGCAGGATGGGGAAGAGCAAAGTGATTCACTGCATTACGGTGGGATCAAAAGGCCTACTGAATCAAATTCATGGCCGCAACGGATTTCAACCACTGCAAATAGAACCTTGCACAGGAATTCAAGGTTTTCTGATGATGCTGAAGAAGATGATGACGGAGATAACGATAATGATGGTGATGATGCTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCCACCACAAGTGGTCATACTGGAAATAAGGATAAAGATTGGGAAGGTGAAGGCTCAGATGAAGATGATGACAGTGATGAAAATATAGTTATCTCAGATGATGATGAATCTTTCTATGCTAAACGGCCTAAAGGAAGGCAAAGAGCTAAGATTGGACAAAACATAAAATCTACTAGAGATCGCAAAGTGTATGCTGCATCTGGTAGACACAGAAGAGTTAAATCATCTTTTGAGGACAATGAGTCAACAACAGAGGACTCTGACAGTGATAGTGATGAGGATTTCAAAAGCTCAAAAAAGCGGAGTGTTCATGTTCGCAAGAATAATGGTCGCTCTTCAGCTACAGGTTTTTCTATGCGCAACAGTGAGGTTCGCACTTCTAGTAGGACTGTTAGGAAGGTATCATATGTGGAAAGTGAAGAAAGTGAAGAAGTTGATGAAGGGAAAAAGAAAAAGTCCCAAAAGGAAGAAATTGATGAGGATGATGGTGACTCCATTGAAAAGGTGCTATGGCATCAACCAAAGGGCACAGCTGAAGATGCTGAAAGGAATAATAGATCAACAGATCCTGTGTTAATGAGTCACTTGTTTGACTCTGAAATTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAAGGGCAGTCACATTTGCATTGTCAGTGGAAGTCTTTTGCCGAGCTGCAAAATCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAAGACATGAGATACAGGAGGAAAATCTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATCAAACAGAACAGTCAGGTGGAAAGGATAATTGCAGATAGGATCACTAAAGATAACTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGCGACTTGGGAAAAGGACATTGATATTGCTTTTGCTCAACATGCTATTGACGAGTATAAGGCTCGTGAGGCTGCTATGGCAGTTCAAGGAAAGATGGTAGATTCTCAGCGAAAGAAGAGTAAAGCAAGTTTGCGGAAGCTTGAGGAACAACCTGAATGGTTGAAGGGTGGAAAGCTACGTGATTATCAACTTGAGGGTCTGAATTTTCTTGTCAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTTGGAAAAACTGTTCAGTCTGTATCAATGCTTGGTTTTCTACAGAATGGTCAGCAAATCCATGGTCCCTTTCTTGTAGTTGTTCCACTGTCCACTTTATCAAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACACGTGCAAGTCGAGAGATTGCAGATATAAAGGAAGAAGGTGGACATGTAGGTTGGGAGGTTAGGGCAGAGGTGAAGTTTGTGGTTGCATTGCGTGGGGAAGGAGCCTTGTCAAAAGTTGAAGCTCAATTATCCCATACTAATTTAGCTGTAAGGACCAAGGTTTGTCAACAATATGAATTTCATAATGATAAAAGACCCGGGAAGCCAATAAAATTCAATGCACTTTTGACAACATATGAAGTAGTTTTGAAGGATAAGGCTGTTTTGTCCAAGATCAAATGGAGTTATCTTATGGTGGATGAGGCTCATAGGCTAAAAAACAGTGAGGCACAGTTGTATACAACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTGGAAGAACTATGGGCTTTGCTTCATTTTCTTGATCCTGACAAGTTCAGGAGCAAGGACGAATTTGTTCAAAACTATAAGAATCTGAGTTCTTTTAATGAAAATGAGCTTGCAAATCTTCACATGGAATTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCGAAAATTGAGCGTATCCTTCGGGTTTCTCTTCTTAATATTGTGGTGGAATTAAAGAAGTGCTGCAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGCTATGGTGGGGACTCAGGAAGTAATGATAACAGTAAGCTAGAGAGAATCGTTTTTAGCAGTGGAAAGCTCGTCATACTTGATAAGCTGCTTGTTAGATTGCATGAAACCAAGCATCGTGTTTTGATCTTCTCTCAGATGGTTAGGATGTTGGATATACTGGGAGAATATATGTCGCTCCGAGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCAGAGTTACGACAACAGGCAATGGATCATTTCAATGCGCCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGAGCAGGAGGTTTGGGTATCAACCTCGCCACAGCAGACACAGTTATAATATTTGATTCTGATTGGAATCCCCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATTTATAGATTTGTGACAAGCAAAAGTGTCGAGGAAGATATTCTGGAGCGTGCTAAGAAAAAAATGGTTCTGGACCACTTGGTTATTCAAAAACTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCGAAGAAAGGAGGCAGTTATTTTGACAAAAATGAGCTGTCTGCAATCCTACGATTTGGAGCTGAGGAGCTTTTTAAAGAAGAAAGAAATGATGAAGAAAGCAAGAAACGACTCCTAAGTATGGATATAGATGAAATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCTGATGGGGAACAGGGAAATGAGTTATTGAGTGCCTTTAAGGTTGCCAACTTTTGCAACGATGAAGATGATGGGAGTTTCTGGAGCCGTTGGATAAAGCCAGATTCTGTTTTCCAAGCAGAGGAAGCTCTTGCTCCTCGATCTGCTAGAAATATTAAAAGCTATGCAGAGGTTGATCCAGCGGAAAGAACTAATAAAAGAAAAAAGAAGGATCCTGAACCACCTGAACGAGTTCAGAAACGCCGCAAAGCAGAGTTTTCTGCTCCTGCAGTACCAATGATTGAAGGAGCATGTGTTCAAGTGAGAAATTGGTCATATGGGAATTTATCTAAAAGAGACGCACTTCGTTTTTCTCGTTCAGTTATGAAATATGGGAATGAGAGCCAAATTGACTTAATTGTTGCCGAGGTGGGTGGTGCAGTTGGTGCAGCTCCACCTGGAGCACAAATTGAACTTTTCAATGCTCTTATTGATGGATGTACAGAAGCAGTGGAACTTGGAAATGTAGATGTGAAGGGGCCTTTGTTGGATTTTTTTGGTGTCCCTGTGAAGGCAAATGATCTACTTACCCGGGTCCAACAACTTCAACTTTTGGCCAAGCGCATTGATCGATATGAAGATCCTATTGCACAGTTTCGTGTTCTGTCATATCTCAAACCATCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGATGCTAGATTGCTTCTTGGAATATTTTTCCATGGGTTTGGTAATTGGGAAAAGATAAGATTAGATGAAAGACTTGGCCTCACGAAAAAAATTGCACCTGTAGAACTTCAACACCATGAAACTTTCTTACCACGAGCTCCAAATTTGAAAGACCGTGCTAATGCCCTTTTGGAGCAAGAACTTGCGGTTCTTGGTGTGAAAAATGCCAATAGCAAGGTCGGACGGAAGGCTTCAAAGAAAGAGAGAGAAAATTTGATCTCACTGGGACGTGGGCAGGAGAAAAAGAAAAAATCGGGTTCTGTTAACGTCCAAACGAGAAAGGATAGATTTCAAAAACCCCAGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAATGAGGAAGTATATGAGCAGTTCAAAGAGGTAAAATGGATGGAATGGTGTCAAGATGTGATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCATAGGTTGCAGCAAACTAGTGCCAATCTTCCCAAGGAAAAGGTGCTTTCAAAAATACGTAACTATTTACAACTTCTTGGGCGAAGGATAGATGAAATTGTGTTAGAGCATGAGGAGGAACCCTATAAGCAATATAGAATGACTGTGCGGCTGTGGAAATATGTCTCCACCTTTTCCCATCTCTCTGGGGAAAGGCTTCATCAAATATATTCCAAACTTAGACAGGAGCAAGATGAGGCAGGGGTTGGCCCCTCTCACGTGAATGGGTCGGCATCTGTTTCATTTACCAGAAATGGAAACCCGTTCCGTCGCCCTATGGAGAGGCAAAGAGGATTAAAGAATATGAATACCTACCAAATGCCAGAAACAGTTGATAATGGTGGGAAATCTGAGGCATGGAAACGAAGAAGAAGATCTGAAAGTGATAATCAATTCCAGGGTCAGGTGCCACCTCAAAGGACCGCAAGTAATGGACTCCGGATTACTGATCCTAACTCACTCGGGATCTTAGGTGCTGGGCCATCGGACAAACGCTTTGCTAACGAGAAACCTTTTAGGACACAACCTGGTGGGTTTCCTTCAAGACAAGGCTTCTCCTCAGGTATAAAGTAA 5325 0.4115 MAFFRNFSNDTVSHGVMEDKSQGQNANRTHRSVGNECTDAISSEKEFDMNMEAQYESDGEPDGSSRLQTEATVDDGDAVKESNLQTAGSKTAMMGRWGTTFWKDCGQMGPQNGSESGQESKSGSDYRNADGSEDNSLDGRAGRLDSDDDDGQKEAGKGPRGHSDVPAEEMLSDEYYEQDGEEQSDSLHYGGIKRPTESNSWPQRISTTANRTLHRNSRFSDDAEEDDDGDNDNDGDDADYEEEDEADEDDPDDADFEPTTSGHTGNKDKDWEGEGSDEDDDSDENIVISDDDESFYAKRPKGRQRAKIGQNIKSTRDRKVYAASGRHRRVKSSFEDNESTTEDSDSDSDEDFKSSKKRSVHVRKNNGRSSATGFSMRNSEVRTSSRTVRKVSYVESEESEEVDEGKKKKSQKEEIDEDDGDSIEKVLWHQPKGTAEDAERNNRSTDPVLMSHLFDSEIDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDMRYRRKISREEIEVNDVSKEMDLDIIKQNSQVERIIADRITKDNSGNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEYKAREAAMAVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNGQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREIADIKEEGGHVGWEVRAEVKFVVALRGEGALSKVEAQLSHTNLAVRTKVCQQYEFHNDKRPGKPIKFNALLTTYEVVLKDKAVLSKIKWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSNDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEADGEQGNELLSAFKVANFCNDEDDGSFWSRWIKPDSVFQAEEALAPRSARNIKSYAEVDPAERTNKRKKKDPEPPERVQKRRKAEFSAPAVPMIEGACVQVRNWSYGNLSKRDALRFSRSVMKYGNESQIDLIVAEVGGAVGAAPPGAQIELFNALIDGCTEAVELGNVDVKGPLLDFFGVPVKANDLLTRVQQLQLLAKRIDRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIFFHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNANSKVGRKASKKERENLISLGRGQEKKKKSGSVNVQTRKDRFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQQTSANLPKEKVLSKIRNYLQLLGRRIDEIVLEHEEEPYKQYRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAGVGPSHVNGSASVSFTRNGNPFRRPMERQRGLKNMNTYQMPETVDNGGKSEAWKRRRRSESDNQFQGQVPPQRTASNGLRITDPNSLGILGAGPSDKRFANEKPFRTQPGGFPSRQGFSSGIK 1774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00746 1774 CDD CD2_tandem 532 588 - -
Spst8g00746 1774 MobiDBLite consensus disorder prediction 365 390 - -
Spst8g00746 1774 MobiDBLite consensus disorder prediction 1651 1774 - -
Spst8g00746 1774 Pfam SNF2-related domain 645 916 IPR000330 GO:0005524|GO:0140658
Spst8g00746 1774 ProSiteProfiles Chromo and chromo shadow domain profile. 534 598 IPR000953 -
Spst8g00746 1774 Pfam Chromo (CHRromatin Organisation MOdifier) domain 535 589 IPR023780 -
Spst8g00746 1774 Gene3D - 1371 1486 - -
Spst8g00746 1774 MobiDBLite consensus disorder prediction 1 39 - -
Spst8g00746 1774 SUPERFAMILY Chromo domain-like 513 589 IPR016197 -
Spst8g00746 1774 MobiDBLite consensus disorder prediction 223 255 - -
Spst8g00746 1774 Gene3D - 536 588 - -
Spst8g00746 1774 MobiDBLite consensus disorder prediction 196 214 - -
Spst8g00746 1774 Coils Coil 1158 1178 - -
Spst8g00746 1774 CDD CD1_tandem 419 499 - -
Spst8g00746 1774 MobiDBLite consensus disorder prediction 273 290 - -
Spst8g00746 1774 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 804 813 IPR002464 -
Spst8g00746 1774 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 964 1115 IPR001650 -
Spst8g00746 1774 MobiDBLite consensus disorder prediction 1714 1734 - -
Spst8g00746 1774 MobiDBLite consensus disorder prediction 126 169 - -
Spst8g00746 1774 CDD SF2_C_SNF 950 1085 - -
Spst8g00746 1774 SMART ultradead3 622 870 IPR014001 -
Spst8g00746 1774 MobiDBLite consensus disorder prediction 1699 1713 - -
Spst8g00746 1774 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 613 895 IPR027417 -
Spst8g00746 1774 MobiDBLite consensus disorder prediction 1234 1263 - -
Spst8g00746 1774 Pfam Helicase conserved C-terminal domain 961 1074 IPR001650 -
Spst8g00746 1774 MobiDBLite consensus disorder prediction 1235 1263 - -
Spst8g00746 1774 ProSiteProfiles Chromo and chromo shadow domain profile. 421 509 IPR000953 -
Spst8g00746 1774 SMART DUF4208_2 1539 1644 IPR025260 -
Spst8g00746 1774 Gene3D - 594 759 IPR038718 -
Spst8g00746 1774 FunFam protein CHROMATIN REMODELING 5 isoform X2 536 588 - -
Spst8g00746 1774 SMART helicmild6 990 1074 IPR001650 -
Spst8g00746 1774 MobiDBLite consensus disorder prediction 391 424 - -
Spst8g00746 1774 SUPERFAMILY Chromo domain-like 418 501 IPR016197 -
Spst8g00746 1774 Gene3D - 876 1186 IPR027417 -
Spst8g00746 1774 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 638 858 IPR014001 -
Spst8g00746 1774 Pfam Domain of unknown function (DUF4208) 1551 1643 IPR025260 -
Spst8g00746 1774 MobiDBLite consensus disorder prediction 105 125 - -
Spst8g00746 1774 MobiDBLite consensus disorder prediction 1486 1526 - -
Spst8g00746 1774 Gene3D - 407 533 - -
Spst8g00746 1774 SMART chromo_7 419 502 IPR000953 -
Spst8g00746 1774 SMART chromo_7 532 591 IPR000953 -
Spst8g00746 1774 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 177 1686 - -
Spst8g00746 1774 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 898 1150 IPR027417 -
Spst8g00746 1774 Coils Coil 1104 1124 - -
Spst8g00746 1774 MobiDBLite consensus disorder prediction 1 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00746 Spst-Chr8 6876799 6893006 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00746 648 961 RAD5 or RAD16-like Gene Family AT5G22750 23.885 1.09e-13 74.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst8g00746 SNF2_N 3.5e-55 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00746 K11367 - gmx:100792398 3025.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00746 8 6876799 6893006 Spst8g00746 8 6876799 6893006 ECH