Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Spst8g00740 | ATGTCGCGGACTGGTAGAATGGCTTCGGATCTTAGCAGAACCGGCCCTGTGGAAAGAGACATTGAGCAGGCCATTACTGCTTTAAAGAAAGGGGCCTGCTTGCTCAAGTATGGAAGAAGAGGAAAGCCCAAGTTTTGCCCCTTTCGTCTTTCCAATGACGAATCTGTTTTGATATGGTTCTCAGGGAAAGAAGAGAAACACCTTAAACTGAGTCATGTCTCTAGAATTATATCTGGACAACGCACACCTATCTTTCAAAGATATCCACGACCTGAGAAAGAATATCAGTCATTCTCTCTTATCTACAATGATCGGTCACTGGACTTGATATGCAAGGATAAAGATGAAGCTGAAGTCTGGTTCAGTGGTTTGAAAGCATTAATTTCCCGTGGCCATCACCGGAAGTGGAGAACAGAGTCAAGAAGTGATGGTATTCCATCTGAGGCTAATAGTCCTCGAACATACACTAGAAGAAGTTCTCCATTAAATTCTCCCTTTGGCAGTAATGAAAGCCTGCAAAAGGATAGTGGGGATCACCTTCGCCTTCATAGCCCATACGAGAGCCCCCCTAAGAATGGTTTGGATAAAGCATTAGATGTGGTTTTGTATGCTGTCCCTCAAAAGGGTTTCTTCCCTCCAGATTCTGCCAGTGCTTCAGTACATTCTGTGTCGTCTGGAGGATCAGACAGTATGCATGGTCACATGAAGACAATGGGTATGGATGCTTTTAGAGTTAGTCTATCAAGTGCTGTTAGCACATCTAGTCAAGGTTCTGGTCATGACGATGGTGATGCTCTAGGGGATGTTTTCATTTGGGGGGAAGGCACAGGTGATGGTGTTCTGGGTGGTGGGAATCACCGAGTTGGGAGTTGTTTGGGTGTAAAAATGGATTCTCTATTTCCCAAAGCCTTGGAATCTGCTGTAGTTCTTGATGTGCAGAATATTGCTTGTGGTGGACGACATGCGGCCCTAGTGACCAAACAAGGTGAAATTTTCTCTTGGGGGGAGGAATCAGGCGGCAGACTCGGGCACGGTGTTGACTCTGATGTTCTTCATCCAAAGCTTATAGATGCTCTAAGTAATACAAATATTGAACTTGTGGCTTGTGGGGAATATCATACATGTGCTGTGACGCTTTCTGGAGATCTTTATACATGGGGTAATGGCACATACAATTATGGACTTCTAGGACATGGAAATCAAGTGAGCCACTGGGTACCAAAGAGAGTAAATGGCCCCTTGGAAGGAATACATGTTTCATATATTTCTTGTGGACCATGGCACACTGCTGTTGTGACATCTGCTGGTCAATTATTTACTTTTGGTGATGGTACATTCGGTGCTTTGGGTCATGGAGACCGAAAAAGTGTTTCATTACCAAGGGAAGTAGAGTCCCTCAAGGGTCTTCGTACTGTACGGGCTGCGTGTGGTGTTTGGCATACGGCTGCAGTTGTGGAAGTCATGGTTGGAAATTCAAGCTCCAGCAACTGCTCTTCAGGGAAGCTGTTTACATGGGGTGATGGAGACAAAGGTAGACTTGGGCATGGTAGTAAGGAAGCAAAACTTGTTCCAACCTGTGTTGCCCTCATCGAACCCAATTTTTGTCAAGTTGCTTGTGGACATAGTCTCACTGTTGCACTTACCACCTCTGGCCATGTTTATACAATGGGTAGTCCTGTTTATGGCCAGTTAGGAAATCCTCAAGCTGATGGGAAGCTACCAATCCGTGTTGAAGGGAAATTGTCAAAGAGTTTTGTGGAGGAGGTAGTTTGTGGTGCATATCATGTTGCGGTTTTAACTTCAAGAACTGAAGTTTACACTTGGGGGAAGGGTGCAAATGGGCGTTTAGGCCATGGGGATACAGATGATAGAAATTCCCCAACATTAGTAGAAGCTCTGAAGGACAAAGATGTCAAAAGTATTGCTTGTGGAACTAATTTCACTGCAGCTATATGTCTGCATAAGTGGGTTTCTGGTGTTGACCAGTCTATGTGTTCTGGCTGTCGAATGCCATTTAATTTCAAAAGAAAACGCCACAATTGCTATAATTGTGGATTTGTTTTTTGCCATTCATGTAGCAGTAAGAAGTCTCTTAAGGCTTCAATGGCACCAAACCCCAACAAACCTTATCGTGTCTGTGATAATTGTTTTAGTAAACTTAGGAAAGCAGTAGAAACTGATTCTTCATCTCATTCTTCTGTGAGCAAAAGAGGAAGTGTCAATCATGGGGCTCTGGAGTTAATTGATAAAGATGATAAATTGGATTCCAGATCTCGCAACCAACTTGCCAGGTTTTCTTCAATTGAATCCTTCAAACAAGTGGAAAGCAGATCTTCTAAGAAAAACAAGAAGTTGGAATTCAACAGCAGCCGTGTCTCCCCTGTTCCAAATGGGGGTTCTCAATGGGGAGCATTAAATATCTCTAAATCTTTCAATCCTGTTTTTGGATCATCGAAGAAATTTTTCTCAGCCTCTGTTCCTGGATCTAGAATTGTTTCCCGAGCAACATCCCCAATATCTAGACGGCCTAGTCCACCTCGATCAACTACACCGACCCCAACACTAGGAGGTCTTACATCCCCAAAGATAGTCGTGGATGATGCTAAGAGGACTAACGATAGCCTCAGTCAGGAGGTTATTAAATTAAGATCACAGGTGGAAAACCTGACTCGGAAGGCCCAACTTCAGGAAGTTGAGTTGGAAAGAACAACTAAACAGCTAAAAGACGCAATAGCAATTGCCGGGGAAGAAACTGCCAAATGCAAAGCAGCAAAGGAAGTAATAAAGTCACTCACTGCTCAGTTGAAGGACATGGCTGAGCGACTACCTGTAGGAGCTGCTAGGAATTTGAAATCACCGTCTCTTTCTTCTGTTGGTTCCAATCCTTGTCCCAATGATGCTAACTATGCTTCCATTGACCGATTAAATATTCAAGCAACAAGTCCAGAGGCAGATTTAACTGGATCAAACAACCAGTTACTTTCAAATGGATCAAGCACAGTTAGTAACCGTAGTGAAGGTCACAATAAACAGATCCAGTCAGATTCAACAAATAGGAATGGGAGCAGAACAAAAGACAGTGAATCACGCAGTGAAAGCGAATGGGTCAAGCAAGATGAACCTGGTGTTTATATTACGCTCACTTCCCTTCCAGGAGGTAAAATAGAGCTCAAGAGAGTTCGCTTCAGTCGGAAGAGGTTCAGTGAGAAGCAAGCAGAGCAATGGTGGGCTGAGAATCGCGCAAGAGTATATGAACAGTACGATGTGCTCATGATTGACAAGTCTTCTGTTGGTGTTGGGAATGAAGACCTAGCTCATTGA | 3321 | 0.4378 | MSRTGRMASDLSRTGPVERDIEQAITALKKGACLLKYGRRGKPKFCPFRLSNDESVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYNDRSLDLICKDKDEAEVWFSGLKALISRGHHRKWRTESRSDGIPSEANSPRTYTRRSSPLNSPFGSNESLQKDSGDHLRLHSPYESPPKNGLDKALDVVLYAVPQKGFFPPDSASASVHSVSSGGSDSMHGHMKTMGMDAFRVSLSSAVSTSSQGSGHDDGDALGDVFIWGEGTGDGVLGGGNHRVGSCLGVKMDSLFPKALESAVVLDVQNIACGGRHAALVTKQGEIFSWGEESGGRLGHGVDSDVLHPKLIDALSNTNIELVACGEYHTCAVTLSGDLYTWGNGTYNYGLLGHGNQVSHWVPKRVNGPLEGIHVSYISCGPWHTAVVTSAGQLFTFGDGTFGALGHGDRKSVSLPREVESLKGLRTVRAACGVWHTAAVVEVMVGNSSSSNCSSGKLFTWGDGDKGRLGHGSKEAKLVPTCVALIEPNFCQVACGHSLTVALTTSGHVYTMGSPVYGQLGNPQADGKLPIRVEGKLSKSFVEEVVCGAYHVAVLTSRTEVYTWGKGANGRLGHGDTDDRNSPTLVEALKDKDVKSIACGTNFTAAICLHKWVSGVDQSMCSGCRMPFNFKRKRHNCYNCGFVFCHSCSSKKSLKASMAPNPNKPYRVCDNCFSKLRKAVETDSSSHSSVSKRGSVNHGALELIDKDDKLDSRSRNQLARFSSIESFKQVESRSSKKNKKLEFNSSRVSPVPNGGSQWGALNISKSFNPVFGSSKKFFSASVPGSRIVSRATSPISRRPSPPRSTTPTPTLGGLTSPKIVVDDAKRTNDSLSQEVIKLRSQVENLTRKAQLQEVELERTTKQLKDAIAIAGEETAKCKAAKEVIKSLTAQLKDMAERLPVGAARNLKSPSLSSVGSNPCPNDANYASIDRLNIQATSPEADLTGSNNQLLSNGSSTVSNRSEGHNKQIQSDSTNRNGSRTKDSESRSESEWVKQDEPGVYITLTSLPGGKIELKRVRFSRKRFSEKQAEQWWAENRARVYEQYDVLMIDKSSVGVGNEDLAH | 1106 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Spst8g00740 | 1106 | Gene3D | - | 20 | 136 | IPR011993 | - | |
| Spst8g00740 | 1106 | Gene3D | - | 245 | 497 | IPR009091 | - | |
| Spst8g00740 | 1106 | Pfam | Transcription factor BRX N-terminal domain | 916 | 951 | IPR027988 | - | |
| Spst8g00740 | 1106 | SUPERFAMILY | FYVE/PHD zinc finger | 655 | 726 | IPR011011 | - | |
| Spst8g00740 | 1106 | MobiDBLite | consensus disorder prediction | 135 | 191 | - | - | |
| Spst8g00740 | 1106 | CDD | FYVE_like_SF | 664 | 717 | - | - | |
| Spst8g00740 | 1106 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 499 | 547 | IPR000408 | - | |
| Spst8g00740 | 1106 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 436 | 484 | IPR000408 | - | |
| Spst8g00740 | 1106 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 380 | 432 | IPR000408 | - | |
| Spst8g00740 | 1106 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 604 | 651 | IPR000408 | - | |
| Spst8g00740 | 1106 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 329 | 377 | IPR000408 | - | |
| Spst8g00740 | 1106 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 550 | 599 | IPR000408 | - | |
| Spst8g00740 | 1106 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 551 | 602 | IPR000408 | - | |
| Spst8g00740 | 1106 | Gene3D | - | 498 | 667 | IPR009091 | - | |
| Spst8g00740 | 1106 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 238 | 489 | - | - | |
| Spst8g00740 | 1106 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 659 | 721 | IPR017455 | - | |
| Spst8g00740 | 1106 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 668 | 728 | IPR013083 | - | |
| Spst8g00740 | 1106 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 267 | 328 | IPR000408 | - | |
| Spst8g00740 | 1106 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 603 | 654 | IPR000408 | - | |
| Spst8g00740 | 1106 | MobiDBLite | consensus disorder prediction | 983 | 1036 | - | - | |
| Spst8g00740 | 1106 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 315 | 325 | IPR000408 | - | |
| Spst8g00740 | 1106 | MobiDBLite | consensus disorder prediction | 788 | 802 | - | - | |
| Spst8g00740 | 1106 | Coils | Coil | 921 | 941 | - | - | |
| Spst8g00740 | 1106 | Pfam | FYVE zinc finger | 655 | 721 | IPR000306 | GO:0046872 | |
| Spst8g00740 | 1106 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 1032 | 1087 | IPR013591 | - | |
| Spst8g00740 | 1106 | Pfam | Unstructured region between BRX_N and BRX domain | 957 | 1026 | - | - | |
| Spst8g00740 | 1106 | PRINTS | Chromosome condensation regulator RCC1 signature | 312 | 325 | IPR000408 | - | |
| Spst8g00740 | 1106 | PRINTS | Chromosome condensation regulator RCC1 signature | 540 | 558 | IPR000408 | - | |
| Spst8g00740 | 1106 | PRINTS | Chromosome condensation regulator RCC1 signature | 331 | 347 | IPR000408 | - | |
| Spst8g00740 | 1106 | PRINTS | Chromosome condensation regulator RCC1 signature | 422 | 438 | IPR000408 | - | |
| Spst8g00740 | 1106 | PRINTS | Chromosome condensation regulator RCC1 signature | 598 | 619 | IPR000408 | - | |
| Spst8g00740 | 1106 | PRINTS | Chromosome condensation regulator RCC1 signature | 381 | 397 | IPR000408 | - | |
| Spst8g00740 | 1106 | PRINTS | Chromosome condensation regulator RCC1 signature | 438 | 452 | IPR000408 | - | |
| Spst8g00740 | 1106 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 329 | 380 | IPR000408 | - | |
| Spst8g00740 | 1106 | Pfam | Pleckstrin homology domain | 22 | 128 | IPR001849 | - | |
| Spst8g00740 | 1106 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 64 | 936 | - | - | |
| Spst8g00740 | 1106 | CDD | PH_PLC_plant-like | 19 | 129 | - | - | |
| Spst8g00740 | 1106 | MobiDBLite | consensus disorder prediction | 143 | 173 | - | - | |
| Spst8g00740 | 1106 | FunFam | Putative E3 ubiquitin-protein ligase HERC1 | 661 | 729 | - | - | |
| Spst8g00740 | 1106 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 500 | 550 | IPR000408 | - | |
| Spst8g00740 | 1106 | MobiDBLite | consensus disorder prediction | 983 | 1020 | - | - | |
| Spst8g00740 | 1106 | MobiDBLite | consensus disorder prediction | 833 | 861 | - | - | |
| Spst8g00740 | 1106 | FunFam | PH, RCC1 and FYVE domains-containing protein 1 | 490 | 660 | - | - | |
| Spst8g00740 | 1106 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 422 | 432 | IPR000408 | - | |
| Spst8g00740 | 1106 | SUPERFAMILY | PH domain-like | 20 | 128 | - | - | |
| Spst8g00740 | 1106 | Coils | Coil | 865 | 906 | - | - | |
| Spst8g00740 | 1106 | SUPERFAMILY | RCC1/BLIP-II | 266 | 656 | IPR009091 | - | |
| Spst8g00740 | 1106 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 474 | 484 | IPR000408 | - | |
| Spst8g00740 | 1106 | SMART | fyve_4 | 653 | 722 | IPR000306 | GO:0046872 | |
| Spst8g00740 | 1106 | MobiDBLite | consensus disorder prediction | 779 | 802 | - | - | |
| Spst8g00740 | 1106 | MobiDBLite | consensus disorder prediction | 1021 | 1036 | - | - | |
| Spst8g00740 | 1106 | ProSiteProfiles | BRX domain profile. | 1033 | 1088 | IPR013591 | - | |
| Spst8g00740 | 1106 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 436 | 487 | IPR000408 | - | |
| Spst8g00740 | 1106 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 381 | 435 | IPR000408 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Spst8g00740 | Spst-Chr8 | 6845805 | 6853082 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Spst8g00740 | 925 | 1097 | Major Intrinsic Protein MIP | AT1G31880 | 32.778 | 1.29e-16 | 81.3 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Spst8g00740 | - | - | gmx:100806439 | 2015.74 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Spst8g00740 | 8 | 6845805 | 6853082 | Spst8g00740 | 8 | 6845805 | 6853082 | ECH | |
| Spst6g02472 | 6 | 57694139 | 57718942 | Spst8g00740 | 8 | 6845805 | 6853082 | PCT |