Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00732 ATGGCTTCATTTGTGGCTACTACAAGGAGGTTACCTTCAGACTCTGGCGCCTTTGCGGACTGGGGAGCGACTAGTTCATCCGGTGGTGGTGGTGGCCGTGCTGTCCCCGTAGACGATCTCTCCCTCGGCTTCAATGCGGGTCCTGCTGCCGCAGCAGCCGCCACTGGACCTGCCACCGGAATGTGGCCCGGCGCAAATAGGTCAGTCAATTACCCCGAAATGGGGATGTTCGTGGTGGCGCCAGCCTCTTCGTTCCACCACCATCACCACCAGCAGCAGCCGCCGTCGCACGATCCCGTCATGGCAGATTCCCTCAACCCAGCCACTGCACTCGGCGTTGGTGTCATCCCTCTCCTCGCTGCTACGCCGTGTCTTGAATCCGAGAACATCCTCGGAAATAGGATTCGCAGCGGTGGAATTCAGTTTTGGCAGGACCAACCGCCCCAGCAGAGCCACTACATGAAAAAGCAGCAGCCGGGGTTTCTCGACCATAGTAACACGAGTTCTGGAAATTTGGTTCAAAACAGTGGCGGGGTAACTGCTTCGGGGACTAGCAGTGGGGGAACAACGTGCCAAGATTGCGGAAACCAGGCCAAGAAAGATTGTACTAATAGAAGGTGTAGGACTTGTTGCAAAAGTCGAGGTTTCGATTGCCCTACCCATGTCAAGAGCACATGGGTCCCCGCCGCACGCCGGAGAGAGCGCCAGCTCATGACTGCGGCCACTGCTGCTGTTGCTGGCTCCAGTGGCTCCACCTCCGGGACTAAAAAACCTAGGCTCATTGCGTCACAAACAACAACAACTTCTCACACTTCCACCTCTAACACCACCCCTCCTAGAAGCTTTGACACAAGCTCTAGTCATCAAGATGCGGGTTTCAAGGAGACTTTACCTGGGCAAGTACGTGCACCAGCTGTTTTCAAGTGTGTAAGAGTGACGGCGGTGGAGGATGGGCAAGATGAGTATGCGTATCAGGCCGTGGTGAAGATTGGTGGTCACGTGTTCAAAGGATTTCTCTATGATCAAGGGTTGGAGAATAGGGATGTGTATCCTAACCTATCTGAGTTGCATTTGGGTGGTGGAAATGGCGGAAGTGGGAGCGGAGGGAGTGGTGGGGTGGGTAGAAATGGGGTTTCTTCTTCTTCTCCAATGATGGATCCTTCTGATGTTTATGCAGCTTCTGGTGGAGGGTTACTTGGGGGTTCTTCTGCTTTTGGTAATCCAATGAATTGA 1233 0.5418 MASFVATTRRLPSDSGAFADWGATSSSGGGGGRAVPVDDLSLGFNAGPAAAAAATGPATGMWPGANRSVNYPEMGMFVVAPASSFHHHHHQQQPPSHDPVMADSLNPATALGVGVIPLLAATPCLESENILGNRIRSGGIQFWQDQPPQQSHYMKKQQPGFLDHSNTSSGNLVQNSGGVTASGTSSGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTAATAAVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKETLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGLENRDVYPNLSELHLGGGNGGSGSGGSGGVGRNGVSSSSPMMDPSDVYAASGGGLLGGSSAFGNPMN 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00732 410 MobiDBLite consensus disorder prediction 238 296 - -
Spst8g00732 410 MobiDBLite consensus disorder prediction 361 386 - -
Spst8g00732 410 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 83 394 IPR007818 GO:0003700|GO:0006355
Spst8g00732 410 MobiDBLite consensus disorder prediction 242 293 - -
Spst8g00732 410 MobiDBLite consensus disorder prediction 372 386 - -
Spst8g00732 410 NCBIfam LRP1 C-terminal domain 297 344 IPR006511 -
Spst8g00732 410 Pfam Domain of unknown function (DUF702) 188 345 - -
Spst8g00732 410 NCBIfam putative zinc finger domain, LRP1 type 190 232 IPR006510 -
Spst8g00732 410 MobiDBLite consensus disorder prediction 151 198 - -
Spst8g00732 410 MobiDBLite consensus disorder prediction 84 103 - -
Spst8g00732 410 MobiDBLite consensus disorder prediction 151 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00732 Spst-Chr8 6797806 6800292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00732 5 390 C2H2 Transcription Factor Family AT5G12330 50.242 9.32e-100 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Spst8g00732 DUF702 1.4e-61 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00732 - - gmx:100817745 608.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00732 8 6797806 6800292 Spst8g00732 8 6797806 6800292 ECH