Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst8g00716 | ATGGCTTTCACACTAGACAGGTGTGAAGATAGCATGGTGTTCACTATGGAGTCTCAGAAGTCAGTGCCTGCTCCCTTCCTGACAAAGACATTCCAACTTGTTGATGACCCTCGCACTGACCACATTGTGTCTTGGGGAGATGATGAAACCACATTTGTTGTGAGGAGGCCCCCAGAGTTTGCTAGAGACCTTCTTCCCAACTATTTCAAGCACAACAACTTCTCAAGCTTTGTTAGGCAGCTAAATACCTATGGTTTCAAGAAGGTAGCTGCTGATAGGTGGGAGTTTGCAAATGAATACTTCAGAAAAGGAGCTAAGCACCTTCTATGTGAAATCCACAGGAGGAAAACCCCTCACCACTATCAACAACACTACCATATGCATGACCAACCACCACAGCTTCTTCAGCCAGAAGAAAATCTGTGTTGGATTGATACACCTCCATCACCATCTCCTAAGCCAGGTGCTGATATCTTAACAGCACTTTCTGAGGACAACCAAAGACTGAGGAGGAAGAACTTCATGCTCTTATCAGAACTCACTCACATGAAGAATCTATACAATGACATCATATATTTCATCCAAAACCATGTGAGTCCTGCTTCCTATGAACAAAGAAGCAGCAGCGCTATTCTGAAGCTAGTAGAATTGGAATCATCACCTCAATCACCAAATTTTATCAGACCAGCTAAGAGCCGTATTATGGAGAAGTCTTTGGTAAGTTCTGGTGATGAGCCTAATAGTTCTGTTAAGCTCTTTGGAGTTCCTCTTTGTGGCAAAAAGAGATTGCACTCAGGTAACCTTGATCAACAAGAATAG | 819 | 0.431 | MAFTLDRCEDSMVFTMESQKSVPAPFLTKTFQLVDDPRTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAADRWEFANEYFRKGAKHLLCEIHRRKTPHHYQQHYHMHDQPPQLLQPEENLCWIDTPPSPSPKPGADILTALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHVSPASYEQRSSSAILKLVELESSPQSPNFIRPAKSRIMEKSLVSSGDEPNSSVKLFGVPLCGKKRLHSGNLDQQE | 272 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst8g00716 | 272 | SMART | hsfneu3 | 22 | 115 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Spst8g00716 | 272 | FunFam | Heat stress transcription factor B-4 | 18 | 116 | - | - | |
Spst8g00716 | 272 | Pfam | HSF-type DNA-binding | 26 | 115 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Spst8g00716 | 272 | PANTHER | HEAT SHOCK TRANSCRIPTION FACTOR | 17 | 230 | IPR027725 | - | |
Spst8g00716 | 272 | PRINTS | Heat shock factor (HSF) domain signature | 77 | 89 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Spst8g00716 | 272 | PRINTS | Heat shock factor (HSF) domain signature | 26 | 49 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Spst8g00716 | 272 | PRINTS | Heat shock factor (HSF) domain signature | 64 | 76 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Spst8g00716 | 272 | Gene3D | - | 18 | 117 | IPR036388 | - | |
Spst8g00716 | 272 | ProSitePatterns | HSF-type DNA-binding domain signature. | 65 | 89 | IPR000232 | GO:0003700|GO:0006355|GO:0043565 | |
Spst8g00716 | 272 | SUPERFAMILY | "Winged helix" DNA-binding domain | 23 | 115 | IPR036390 | - | |
Spst8g00716 | 272 | Coils | Coil | 267 | 272 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst8g00716 | Spst-Chr8 | 6670734 | 6671922 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst8g00716 | 20 | 264 | HSF | AT1G46264 | 51.536 | 4.51e-88 | 264 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HSF | Spst8g00716 | HSF_DNA-bind | 5.1e-32 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst8g00716 | K09419 | - | gmx:100776060 | 511.531 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Spst8g00716 | 8 | 6670734 | 6671922 | Spst8g00716 | 8 | 6670734 | 6671922 | ECH |