Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00680 ATGAGGAAGAAGCTAGATACTCGTTTTCCTGCGGCTAGGATAAAGAAAATTATGCAAGCTGATGAGGATGTAGGGAAGATTGCAATGGCAGTGCCTCTTTTAGTTTCTAAAGCACTAGAACTATTTCTACAAGATTTGTGTGATCGAACATATGAGATAACTTTGAGGAGGGGAGCAAAGACAATGAATGCTTTCCATTTAAAACAGTGTGTGCAGACTTTTAATGTCTTTGACTTTCTGAAAGATATTGTCAGCAAGGTTCCTGATTTAGGTGGTTCTGTTGCAAATGGTGATGACCATACTGTCAAGAGGAGGAAAGTTGCTGAAGATGATAGTGGTAGCCACGAGGAGCCCAAGAGAAATAACAAGGCAGAGCCTGGACATACCAGTGGGAGAGGAAGGGGTAGGGGAAGAGGTAGGGGTCGTGGTCGTGGAATAAGAACTGTAGATCAAGAGGTGAGTTCACATGTCAAGTGTGAAGAAGATTCCGATGTATTGAAGCAAAATGAAAAACAGAGTCAAAGCAATGAAAGCATGGAAAATGCGTCATCACCTGAAGAAGTTAAGCAGACTCTTCGGATTAGCAAGCCGGCCCAAGTGTCCATTCGAAATTTTGACTTAAACATGGACCCAGATGAGAATATGGATTCGATAGAATCACTAACTCCTGTTCCAACTGGTTCATCTGCAAAATCAATATCAGAAGAGAAGCCTGAGGAGTACCCTGGATGGTCCTTGTCTGATATGGAAAAAATGACCATTGATCCCATTCAACTAGCTAACATAAATGGAAGAATTGATGAAGATGAAGAGGATTACGATGAAGAAATGTAA 834 0.4137 MRKKLDTRFPAARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSKVPDLGGSVANGDDHTVKRRKVAEDDSGSHEEPKRNNKAEPGHTSGRGRGRGRGRGRGRGIRTVDQEVSSHVKCEEDSDVLKQNEKQSQSNESMENASSPEEVKQTLRISKPAQVSIRNFDLNMDPDENMDSIESLTPVPTGSSAKSISEEKPEEYPGWSLSDMEKMTIDPIQLANINGRIDEDEEDYDEEM 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00680 277 MobiDBLite consensus disorder prediction 98 132 - -
Spst8g00680 277 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Spst8g00680 277 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Spst8g00680 277 MobiDBLite consensus disorder prediction 169 191 - -
Spst8g00680 277 MobiDBLite consensus disorder prediction 90 191 - -
Spst8g00680 277 FunFam dr1-associated corepressor homolog 1 86 - -
Spst8g00680 277 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 161 - -
Spst8g00680 277 MobiDBLite consensus disorder prediction 143 168 - -
Spst8g00680 277 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Spst8g00680 277 MobiDBLite consensus disorder prediction 207 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00680 Spst-Chr8 6229681 6232658 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00680 1 266 CCAAT-HAP5 Transcription Factor Family AT3G12480 44.369 3.23e-59 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Spst8g00680 CBFD_NFYB_HMF 2.1e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00680 K21752 - gmx:100814800 420.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00680 8 6229681 6232658 Spst8g00680 8 6229681 6232658 ECH