Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00678 ATGTCAAGTGGAGCAACGCACTGGTGTTATGCATGCAGACAGCCAATTGTGCTTGATGGGAGAGACGCTCTTTGCCCTTACTGCGATGGAGGATTTATACAAGAACTTGATGAGTTGCGAGGAGCTGCACCCCAGCATACGTATTCATCTCAGTCAGGAGAGTTTCATCAAATGCCTGACCTTTTCGATGCTATACATGCTTTTATGGGGCAGAGAGGGTCTGACCAGAGATTCGGGCTTATGGATGCTGTTGATAATTTCATGAGGCATAGAATGGCTGGAAGAAACTCAAACTTTGATGTTAGAGGGAGGTCTGGTTCTTTCCCAGCTCCTGAACAAAGTTGGGGTGTTTTTAGTTCTGGTCCTTATTTAATATTTCATGGTCAAGTTCCTGGATTCACCTTGGCTACTGGGAGCCCAAGAGGAGGTCCTAGGCGTGTTGATTTTGGTGATTACTTTATGGGTCCTGGACTGGAAGAACTTATCGAGCAACTCACCATGAATGACCGGCGCGGTCCACCCCCAGCGGCTCGATCTTCCATTGATGCAATGCCTACTATTAGGATAACACAGGCACATCTTCGCTTAGATTCACACTGCCCAGTTTGTAAAGAGAAATTTGAACTGGGCACTGAAGCCAGAGAGATGCCATGCAACCATATTTACCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCATGTCCTGTTTGCCGTGTTGAGTTGCCACCTCAAGGACAGGTTGTTTCCCGCGGTACTCGAAGTTGGGGAGGAAGGAATGCCAGCACCAGCAGCAGTGGTGGCGATGATAGCTCCAGAGGCAGGGAGAACAACAACCCTCAGAACCAGGGAAGGAGAAATCCATTTTCATTTTTGTGGCCATTCCGCTCATCTAGCTCAAACAATAATCATTATTCTGAGACTGGGGGAAGCAGCTCTTCAACCACTCCTGACCAGAATAACGGAACAAGTTATAGTGGTTGGCCTTTTGATCACTAA 1005 0.4716 MSSGATHWCYACRQPIVLDGRDALCPYCDGGFIQELDELRGAAPQHTYSSQSGEFHQMPDLFDAIHAFMGQRGSDQRFGLMDAVDNFMRHRMAGRNSNFDVRGRSGSFPAPEQSWGVFSSGPYLIFHGQVPGFTLATGSPRGGPRRVDFGDYFMGPGLEELIEQLTMNDRRGPPPAARSSIDAMPTIRITQAHLRLDSHCPVCKEKFELGTEAREMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPQGQVVSRGTRSWGGRNASTSSSGGDDSSRGRENNNPQNQGRRNPFSFLWPFRSSSSNNNHYSETGGSSSSTTPDQNNGTSYSGWPFDH 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00678 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 247 IPR013083 -
Spst8g00678 334 SMART ring_2 200 240 IPR001841 -
Spst8g00678 334 FunFam E3 ubiquitin-protein ligase RING1-like 164 247 - -
Spst8g00678 334 Pfam Ring finger domain 199 241 IPR001841 -
Spst8g00678 334 Pfam zinc-ribbon 6 36 IPR039525 GO:0061630
Spst8g00678 334 SUPERFAMILY RING/U-box 180 248 - -
Spst8g00678 334 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Spst8g00678 334 CDD RING-H2_RNF126-like 200 241 - -
Spst8g00678 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 98 245 - -
Spst8g00678 334 MobiDBLite consensus disorder prediction 251 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00678 Spst-Chr8 6215575 6216579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00678 144 256 C3H Transcription Factor Family AT5G01980 43.478 3.30e-27 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00678 K11982 - gmx:100813674 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00383 8 3745228 3746370 Spst8g00678 8 6215575 6216579 ECH
Spst8g00678 8 6215575 6216579 Spst8g00678 8 6215575 6216579 ECH