Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00677 ATGGCTGTCACCTTCTCAGATCTACACACCGAAGAGGGAATCAAATCCCTCGATCAATTCCTTTCTGGGAAAACTTATATTTCTGGGGATCAATTGACAAAGGATGATATCAAAGTGTATGCAGCTGTTGTAGAGAAGCCGGGGAACACTTTCCCTAATGCTGCCAAGTGGTACGATGTTGTCTCTTCTCATGTTGCCTCAAGCTTCCCTGGGAACGCTCAAGGGGTTAGATTCAGTACCGTAGCTGCTCCAGCTGAAGCTGCACCCGCCAAAGCTGCTGCTGCTGAAGATGATGATGATCTTGATCTCTTTGGTGATGAGACAGAGGAGGATAAGAAGGCTGCAGAGGAAAGGGAGGCTGCTAAAAAGTCTACTAAGAAAAAAGAAAGTGGCAAGTCTTCTGTCCTCCTTGATGTTAAGCCTTGGGACGACGAGACCGACATGAAGAAGCTGGAAGAGGCTGTCCGCAGTGTTGAGATGCCTGGTTTATTGTGGGGAGCATCCAAACTGGTGCCGGTTGGATATGGAATCAAGAAGTTGCAGATCATGATGACTATTGTGGATGACCTTGTATCTGTGGACAGCCTCATTGAGGAATATCTGACAGTTGAGCCATGCAACGAGTATATTCAAAGCTGTGACATTGTTGCATTCAACAAAATTTAA 666 0.461 MAVTFSDLHTEEGIKSLDQFLSGKTYISGDQLTKDDIKVYAAVVEKPGNTFPNAAKWYDVVSSHVASSFPGNAQGVRFSTVAAPAEAAPAKAAAAEDDDDLDLFGDETEEDKKAAEEREAAKKSTKKKESGKSSVLLDVKPWDDETDMKKLEEAVRSVEMPGLLWGASKLVPVGYGIKKLQIMMTIVDDLVSVDSLIEEYLTVEPCNEYIQSCDIVAFNKI 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00677 221 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 2. 210 221 IPR001326 GO:0003746|GO:0005853|GO:0006414
Spst8g00677 221 Gene3D - 125 221 IPR014717 -
Spst8g00677 221 Gene3D - 6 63 - -
Spst8g00677 221 SUPERFAMILY eEF-1beta-like 129 221 IPR036219 -
Spst8g00677 221 ProSitePatterns Elongation factor 1 beta/beta'/delta chain signature 1. 97 105 IPR001326 GO:0003746|GO:0005853|GO:0006414
Spst8g00677 221 CDD EF1B 130 221 IPR014038 GO:0003746|GO:0006414
Spst8g00677 221 Pfam EF-1 guanine nucleotide exchange domain 134 221 IPR014038 GO:0003746|GO:0006414
Spst8g00677 221 FunFam Elongation factor 1-beta 1 like 126 221 - -
Spst8g00677 221 SUPERFAMILY GST C-terminal domain-like 10 65 IPR036282 -
Spst8g00677 221 PANTHER EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER 8 221 - -
Spst8g00677 221 SMART EF1_GNE_2 132 221 IPR014038 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00677 Spst-Chr8 6208136 6211168 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00677 1 221 Eukaryotic Initiation Factors Gene Family AT5G12110 75.439 2.72e-109 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00677 K03232 - gmx:100500082 330.102
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst6g02708 6 94668878 94675970 Spst8g00677 8 6208136 6211168 PCT