Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00675 ATGGACATGATCGTGGTAGTTATTGTCACAGCAACTTTCTCCTTTCTCGTATCTACTGTGTTGTCATTACACGAGGAACATAATAACGATGATCAGTTAGAGGAAAATAATTTAAGGAAAGGGCCATGGACAGCTGAAGAAGATGCAGTCTTGGAAGCATATGTGACAGGACATGGACCAGGAAATTGGAACGAGGTCATGAAAAACACTGGATTAGCTCGTTGTGGGAAAAGCTGTCGTCTAAGGTGGACAAATCATCTAAGACCAGATCTGCGAAGAGGTGCATTCAGCCACGAAGAACAACTTAAAGTCATTGAGTTACATGCTTTAATGGGAAATAAATGGGCCAAAATAGCATTAGAGTTGCCTGGACGAACAGACAATGAAATAAAGAACTTTTGGAACACAAGATTGAAGAAAAGGAAACGTCTTGGCTTATTAGACTACTCAGATGATGTAAAACCAAAAGCTGGTCCAGAAGCTTTCACTTCCTGTGTCAATGACTCAGAAGCAGAAGCAGGTACATCATCTTGTGTACCACATTTGGCATTCAACAATGTCAGTGAAAATCAAGCACAGTGTCTACCACCAATTTCTGAGGTACCTGAAGACCAGCTTCATGAGTTTGCATGTTCAAATAACCCTTCTTGTTGGGCATCAGAGTCGTCTCCATTGTCATGGTCACTTGATGGTGACTCATTATTAAATGATTTATCATTTTCAGCATTTGATGATTTATCATTCCCACCATTGGATGATGAGTCATTGACAGTGAGAGAGGCTCTTGAGGGTGAAACTAATGAGTACTATGTACCACGTCCTCCTGGCAGCAATGGGTATTTGGAATCCATATTTTATCCACCAAAGGTTTTGGAAGAAGCAGATGAAGCTTCCAAGCAAGGGAATTCTGGTGACTTTAGATGGGCAGAGGATCATGATAAGGACTATGATGATGCTATCAAGGATACTTTATTTGGGTGA 981 0.4088 MDMIVVVIVTATFSFLVSTVLSLHEEHNNDDQLEENNLRKGPWTAEEDAVLEAYVTGHGPGNWNEVMKNTGLARCGKSCRLRWTNHLRPDLRRGAFSHEEQLKVIELHALMGNKWAKIALELPGRTDNEIKNFWNTRLKKRKRLGLLDYSDDVKPKAGPEAFTSCVNDSEAEAGTSSCVPHLAFNNVSENQAQCLPPISEVPEDQLHEFACSNNPSCWASESSPLSWSLDGDSLLNDLSFSAFDDLSFPPLDDESLTVREALEGETNEYYVPRPPGSNGYLESIFYPPKVLEEADEASKQGNSGDFRWAEDHDKDYDDAIKDTLFG 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00675 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 35 87 IPR017930 -
Spst8g00675 326 Gene3D - 95 141 - -
Spst8g00675 326 SMART sant 39 89 IPR001005 -
Spst8g00675 326 SMART sant 92 140 IPR001005 -
Spst8g00675 326 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 142 IPR017930 -
Spst8g00675 326 CDD SANT 95 138 IPR001005 -
Spst8g00675 326 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 25 241 - -
Spst8g00675 326 Gene3D - 40 92 - -
Spst8g00675 326 FunFam MYB-related transcription factor 39 92 - -
Spst8g00675 326 ProSiteProfiles Myb-like domain profile. 88 138 IPR001005 -
Spst8g00675 326 SUPERFAMILY Homeodomain-like 37 134 IPR009057 -
Spst8g00675 326 CDD SANT 42 87 IPR001005 -
Spst8g00675 326 ProSiteProfiles Myb-like domain profile. 35 87 IPR001005 -
Spst8g00675 326 Pfam Myb-like DNA-binding domain 40 87 IPR001005 -
Spst8g00675 326 Pfam Myb-like DNA-binding domain 93 136 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00675 Spst-Chr8 6200037 6202554 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00675 28 167 MYB Transcription Factor Family AT2G26960 62.143 4.36e-56 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst8g00675 Myb_DNA-binding 8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00675 K09422 - ccaj:109791291 261.536