LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst8g00661	ATGGCCAAGAAACGAAAGCTTCGATCCTCAGACCCCGAACCGGCCAAACCCATCGACCCACAGCAACAAGACCAAGAGCAAGTGGAACAACTCGACCAACAGCAACAACAACAACCTAACCCCGAACCAACCCTAGAAGACCCCAACACCATGGCCGTCGACGAGCCAACAGAGGAACAACAGCAACAACAGCAAATTGCAGAAGGCGAAGAAGAGGAAGAGGAAACGGAGGAGCAACAGGAGCAGGAGCCAGAAACCCTAGAAGAGCAAGAGGAGCCGGAAACCCTAGAAGCTGCGAACCACGCCGAAGCCAACGGTGCTGACGAAGAAGGGAACAACGAAGAGGAAGATGAGGATCTCAGTCTTGAAGATGAACCTGTGGAGAAGCTTCTCGAACCCTTCACGAAGGAGCAGCTGCACGCTCTTGTGAAGCAGGCCGTGGAGAGGTTCCCTGAATTCGTCGAGAGCGTCCGCCAGCTCGCCGATGTGGACCCGGCCCACCGGAAAATCTTCGTCCACGGCCTCGGCTGGGACGCCACAGCTGAAACCCTAACCTCGGTGTTCGGGAAGTACGGAGAGATCGAGGACTGCAAGGCTGTCACCGACAAAGTCTCCGGCAAATCGAAGGGTTACGCTTTCATCCTTTTCAAACATAGGGATGATGCTCGCAAGGCGCTGAAAAATCCCCAGAAGCAGATCGGGAACCGCACCACCTCTTGCCAGCTTGCCTCTGCTGGCCCTGTTCCGGCGCCCCCGCCGAACGCGAACCCGGTTTCTGAGTACACGCAGAGAAAGATCTTTGTGAGCAACGTGAGTGCTGAGATTGATCCTCAGAAACTGCTTGAATTCTTCAAGCAGTTTGGGGAGGTTGAGGATGGTCCTCTTGGGCTCGATAAGAACACTGGGAAACCTAAGGGTTTTGCATTGTTTGTTTATAAGTCTGTGGAGAGTGCTAAGAAGGCTTTGGAAGAGCCTCATAAGAACTTTGAGGGTCATACTCTGTACTGTCAGAAGGCTGTTGATGGTCCCAAGGGGAACAAGGGGTATCATCAGTATCACCATCAACAGCATTCTCATCATCACCACCATCACCATCATCAGCCTCATTATCAGAGAAAGGAGAAGAACAAGTATTCATCTGGAGGTGGTGGACCGTCCCATGGCAGTGGTCATTTGATGGCCCCCTCTGCCTCTGCTGTGGGGGGTTTCAACCCGGGAGTGCCGGCTCAGGGGTTGAATCCTGCTCTTGGACAGGCGCTGACTGCTTTGCTTACTAACCAGGGAGCTGGGTTGGGTCTTGGCAATCTGCTTGGAGGGCTTGGTGGTGCCCCAGTTAACCAGGCCGGGCCACCTGCCCCGTATGGGAACCAGCCTGCTATGGGATATGGAAATCAGCCAGCAATGCAACAGGGATACCAGAATCCTCAAATGGGCCAGAGCAGTGGTGTTAGACCCCACCCTGGTGCTGGTGCTCCTTACATGGGTCACTAG	1491	0.5426	MAKKRKLRSSDPEPAKPIDPQQQDQEQVEQLDQQQQQQPNPEPTLEDPNTMAVDEPTEEQQQQQQIAEGEEEEEETEEQQEQEPETLEEQEEPETLEAANHAEANGADEEGNNEEEDEDLSLEDEPVEKLLEPFTKEQLHALVKQAVERFPEFVESVRQLADVDPAHRKIFVHGLGWDATAETLTSVFGKYGEIEDCKAVTDKVSGKSKGYAFILFKHRDDARKALKNPQKQIGNRTTSCQLASAGPVPAPPPNANPVSEYTQRKIFVSNVSAEIDPQKLLEFFKQFGEVEDGPLGLDKNTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYHQYHHQQHSHHHHHHHHQPHYQRKEKNKYSSGGGGPSHGSGHLMAPSASAVGGFNPGVPAQGLNPALGQALTALLTNQGAGLGLGNLLGGLGGAPVNQAGPPAPYGNQPAMGYGNQPAMQQGYQNPQMGQSSGVRPHPGAGAPYMGH	496

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst8g00661	496	Gene3D	-	159	246	IPR012677	-
	Spst8g00661	496	Gene3D	-	252	390	IPR012677	-
	Spst8g00661	496	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	168	245	IPR000504	GO:0003723
	Spst8g00661	496	MobiDBLite	consensus disorder prediction	20	45	-	-
	Spst8g00661	496	SUPERFAMILY	RNA-binding domain, RBD	248	362	IPR035979	GO:0003676
	Spst8g00661	496	MobiDBLite	consensus disorder prediction	344	397	-	-
	Spst8g00661	496	MobiDBLite	consensus disorder prediction	94	108	-	-
	Spst8g00661	496	MobiDBLite	consensus disorder prediction	65	93	-	-
	Spst8g00661	496	MobiDBLite	consensus disorder prediction	1	122	-	-
	Spst8g00661	496	SMART	rrm1_1	169	241	IPR000504	GO:0003723
	Spst8g00661	496	SMART	rrm1_1	265	337	IPR000504	GO:0003723
	Spst8g00661	496	MobiDBLite	consensus disorder prediction	350	372	-	-
	Spst8g00661	496	MobiDBLite	consensus disorder prediction	468	496	-	-
	Spst8g00661	496	Coils	Coil	59	79	-	-
	Spst8g00661	496	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	266	334	IPR000504	GO:0003723
	Spst8g00661	496	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	170	237	IPR000504	GO:0003723
	Spst8g00661	496	SUPERFAMILY	RNA-binding domain, RBD	156	249	IPR035979	GO:0003676
	Spst8g00661	496	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	264	342	IPR000504	GO:0003723
	Spst8g00661	496	PANTHER	EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G	69	353	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst8g00661	Spst-Chr8	6109979	6111469	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst8g00661	260	343	C2H2 Transcription Factor Family	AT2G19380	29.762	2.68e-09	57.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst8g00661	K12741		-	gmx:100783742	693.345