Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00643 ATGTCGGTGGGCTTGATCAGCTCCCAAATCCTCTCTACACTAACTGGAACACATTTTGTGTTTTGGATCACCATGGACCATAAACTAGCAGCAACAACTGAAGGACAACCTATAAGATGTAAAGCTGCGATTTGTCGCAAGCCAGGTTCTCCACTGAGTATTGAGGAGATCATTGTGGCACCTCCAATGCCTCGTGAAGCTCGGATTCGTGTTATATGCACCTCTCTCTGTCATACCGATGTCCCTCCTGCAGTTTATCCAAGAATCTTGGGTCATGAGGCTGTTGGGGTTGTGGAAAGCGTAGGAGAGGATGTAACTGAAGTTACAAAAGGAGATGTGGTTGTCCCAATTTTCTTATCTGATTGTGGGGAGTGTATAGATTGCAAATCAAGCAAGAGCAATCTTTGTTCAAAGTTTCCTTTCGAGTTGTCTCCTTGGATGCCTAGATATGCCACATCAAGATTCAAGGATTTAAATGGAGAGATCATACACCATTTCTTGTCTGTTTCTAGTTTTAGTGAGTACACTGTGGTTGACATTGCCCATCTAACCAAGATTGATCAAGCAATACCACCCAACAGGGCATGCCTACTTACTTGTGGTATATCAGCTGGGATCGGTGCTGCTTGGATAGCAGCAGGTGTGGAGCCAGGCTCTACAATTGCTATTTTTGGGCTGGGAAGTATTGGATTAGCTGTTGCTGAGGGAGCTAGACTTTGTGGAGCAACTAAGATTATAGGTGTGGATGTCAACCCAGAAAAATATGAAATTGGAAAAAAGTTTGGACTCACTGACTTTGTCCAATCTGGAGAAAGTGGAGAAAAATCTGCGAGCCAGGTTATCATAGAGATGACTGGTGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGGCATCATTGATGAATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGGAAAACTATAGTTCTGGGAGTGGACAAGCCAGGATCCAAGTTGAACCTTAGCTGTAGTGAGGTACTGGTTAGTGGGAAGAGCCTCAGGGGATGCTTATTTGGAGGACTAAAACCCAAGTCTCATGTTCCCATTCTCCTTAAACGCTACATGGACAAGGAGCTGAATTTGGATGAGTTTGTCACACATGAGATGGAGTTCAAGGACATCAACAAAGCTTTTGATTTATTGATTGAAGGACAGTGTCTTCGATGTGTGATTTGGATGGACAAATGA 1215 0.437 MSVGLISSQILSTLTGTHFVFWITMDHKLAATTEGQPIRCKAAICRKPGSPLSIEEIIVAPPMPREARIRVICTSLCHTDVPPAVYPRILGHEAVGVVESVGEDVTEVTKGDVVVPIFLSDCGECIDCKSSKSNLCSKFPFELSPWMPRYATSRFKDLNGEIIHHFLSVSSFSEYTVVDIAHLTKIDQAIPPNRACLLTCGISAGIGAAWIAAGVEPGSTIAIFGLGSIGLAVAEGARLCGATKIIGVDVNPEKYEIGKKFGLTDFVQSGESGEKSASQVIIEMTGGGADYCFECVGMASLMNEAYASCRKGWGKTIVLGVDKPGSKLNLSCSEVLVSGKSLRGCLFGGLKPKSHVPILLKRYMDKELNLDEFVTHEMEFKDINKAFDLLIEGQCLRCVIWMDK 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00643 404 FunFam Alcohol dehydrogenase 6 43 215 - -
Spst8g00643 404 SUPERFAMILY GroES-like 33 211 IPR011032 -
Spst8g00643 404 Gene3D - 205 345 - -
Spst8g00643 404 FunFam S-(hydroxymethyl)glutathione dehydrogenase 205 345 - -
Spst8g00643 404 Gene3D - 43 397 - -
Spst8g00643 404 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 190 365 IPR036291 -
Spst8g00643 404 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 91 105 IPR002328 GO:0008270|GO:0016491
Spst8g00643 404 Pfam Zinc-binding dehydrogenase 229 349 IPR013149 -
Spst8g00643 404 SUPERFAMILY GroES-like 353 401 IPR011032 -
Spst8g00643 404 PANTHER ALCOHOL DEHYDROGENASE 35 400 - -
Spst8g00643 404 Pfam Alcohol dehydrogenase GroES-like domain 65 185 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00643 Spst-Chr8 5985853 5988490 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00643 65 226 Monolignol Biosynthesis Gene Families AT4G37970 26.163 1.10e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00643 K00121 - gmx:100788587 701.434
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst8g00643 8 5985853 5988490 Spst8g00643 8 5985853 5988490 ECH
Spst6g02641 6 84532233 84538611 Spst8g00643 8 5985853 5988490 PCT