LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst8g00624	ATGGAACTCAAAAAAGGGATACTGCTATTGCTTTTGTTGCTGGAGTATGTTTGTTGCAATGTTGAAGCAAAGTGTGTGAAGGGATGTGACGTAGCTTTAGCTTCCTACTATGTGAGTCCAGGTTTTCTAGTCTTGGATAATATAACACGCTTGATGGAATCAAGTGTTCTGTCCAATGACGTTATAATCAGCTACAATAAAGACAACATTGTCAATCGAACTCTGCTCTCCTTAATGAGAATCAATATTCCATTTCCCTGTGACTGTATCCGTGGTGAGTTTCTGGGGCATGTGTTTCAGTACTCGGCTGCTGCAGGTGACACTTATGATTCGATTGCCAAAGTGAAATATGCCAATCTCACCACTATTGAGCTTTTGCGGAGCTTCAACAGTTATGGCCAAAATGATATACCCGCAAATGCCATGGTTAATGTCACGGTCAATTGTTCTTGCGGGAACAGCCAGGTTTCAAAAGATTATGGATTGTTTATTACCTATCCACTCAGGCCTGGCAATAGTTTGCATGTTATTGCCGACAAGGCTCATCTTGATGCACAGTTGCTGCAGAGTTATAATCCTGGAGTCAATTTCAGCAAAGAGAGTGGCATTGTCTTCATTCCAGGAAGAGGTCTAGCTAGGGGTGCTGTTGCTGGAATATCCATAGCAGGAATAAGCGGTCTTCTATTATTAGTAATTTGCATATATGTTAAAGTCTTCCAAAAGAAGGAAGGAGAGAAACCTAAATTACCAACAGAAAAGTCTTTGGCGTTTTCAACTCAAGATGCCTCTGGAAGTACAGAATATGAAACTTCGGGATCCAGTGGGACTGCTACTGCTAGTGCTACTGGCCTTACAGGCATTATGGTGGCGAAATCAATGGAGTTCACATATCAAGAACTAGCAAAGGCTACAAATAACTTTAGCTCGGAGAATAAAATTGGTCAAGGTGGATTTGGAGCTGTCTTTTATGCAGAATTGAGAGGCGAGAAAACTGCAATTAAAAAGATGGACGTGCAAGCATCCACCGAATTTCTTTGTGAGTTGAAGGTCTTAACTCACGTTCATCATTTGAATCTGGTGCGTTTGATTGGATATTGCGTTGAAGGATCTCTTTTCCTTGTATATGAATATATTGACAACGGAAACTTAGCCCAGTATTTGCATGGTACAGGGAAAGATCCTTTTCCATGGTCTAGCCGAGTGCAAATTGCGCTAGATTCAGCCAGAGGCCTTGAATATATTCATGAGCACACTGTGCCAGTGTATATCCATCGTGATGTAAAATCTGCAAATATATTAATAGACAAACACTTACGTGGAAAGGTAGCAGATTTTGGCTTGACTAAACTTTTTGAGGTTGGAGGCTCAACACTTCACACTCGACTTGTGGGAACATTTGGATACATGCCACCAGAATATGCTCAATATGGTGACGTTTCTCCAAAAGTAGATGTATACGCTTTTGGTGTGGTTCTTTATGAACTTATTTCTGCAAAGAATGCTGTCCTAAAGACAGGTGAATCTGTTGCTGAATCCAAGGGCCTTGTAGCTTTGTTTGAAGAAGCACTTAATCAGAGTAATCCTTCCGAAGGTATTCGCAAACTAGTGGATCCTAGGCTTGGAGAAAACTATCCAATTGATTCAGTTCTGAAGATTGCTCAACTTGCTCGAGCTTGTACAAGAGATAATCCACTACTACGCCCAAGTATGAGGTCCATAGTTGTTGCTCTTATGACACTTTCATCACCTACCGAGGATTTCTACGATGCTTCCTACGAAAATCAAACTCTCATAAATCTCCTAAAAGCCTCATCCATCGTCTCCAAAACAAAACGCAGAAGAAGGCTATGGCTGAGCGAGGAGGACCAGGGCGACGACGAGATCATCCGCTCCGCCACAGAGCTCCACGACGCCAGTATCCGCTTCAGTAAATGCCGCACCAAACAGGAAACGACGCACCAAACAGGAAACGACGTCACCTCCTACGTATTCACGAACACACCACATCGGAGAGAGATGGATTTCGAACTGAGAAGGGCGAGAGAAAAGTTAGAGAAAGAGCAGAGGGAGAGGAAGGAAAGAGCGAGATTGAAAGTGCAGAAGGAAAGAAAGGCCAAAGAAGAGGCTCAGAGACAAAAGGAAGCCCTCGAAGCTGTCCAAAGATCTCGTCGTATTGATGCGGTCGAAGCGCAACTCAAGGCCGACCAACAGATGCAAGAAACGCTACTTGCTGGCAGAGGAATAGTGTTTTATCGACTACTAGAGGCTGTACCTTATCAAGGTGGTGGAGATAAGATCAAGCTTCCTCCTTCTTGCTTCACAGAACTGTCTGATCAGGGTGCTTTTGATAAGGGACCCATATACTTTCAATTGTCATTAGTTCACAAGGAAAGCTCTTCAAGCTTTCAAGATACTAATAAAGATAACCAGGGGACCACCCATTCAGGAGTTTTGGAATTCACTGCTGATGAAGGTCAAGTAGGACTTCCTCCTCATGTTAGGAATAATTTATTTTCTGAAGGCGCTTCAGAATCTCCATTAGTTGAAGTCCGCTATGTTTGGCTTCCAAAAGGGACATACGCAAAACTTCAACCTGAAAGAGTAGGATTTTCTGACTTGCCAAATCATAAGGCTATCCTTGAAACTTCTCTTCGGCAGCATGCTACCCTTTCTCAAGGTGACATTTTAACTGTAAACTATGGAGAACTTGCATATAAATTAAGGGTACTTGAGTTGAAACCTTCTTCAAGTGTATCTGTTTTAGAAACAGACATTGAAGTGGACATTGTTGATCCTGATACCTCTTCCGAAAAGGCAGATGAGCATGTTTTAATACCACTTGCATTTGGAATGTCACAAAGTGGAACAGTAGAAGAAGGAAAATTTGTGTATTACAAATTTTCTATAGACAATAACGTCATATGGGAGAAACTATCTTCTGGGAATTCTTGTATCGAGGTAAAATTAGAGTCGGAGACTGGTGGGGGGGACACTGATCTTTTCATCTCTAAACATCCTCTCATATTTCCGACACGACACCAGCATGAGTGGTCTTCTCATGATATTGGCGCAAAGAGTTTGATTCTTAGTTCTAAAGATAAAAGCTTGGGTACGGGGACCTACAGCATTGGTATTTATGGCTTCAAGGGATTGACTAAGTATAAAATATCAGCAGTGGTCCGGGATAACTTCAACCAAAAAGTTGGTCAGCAAGCATCATCTTCTGTGTCATCCGTGGAAATGGATACCGAACAATGTACGAACTGCAAGCATTATATACCCACTAGGACTATTGCACTGCATGAAGCCTACTGTAGAAGGCACATTGTGGTCTGTCAGCATGCAGGCTGTGGAGTTGTTCTTAGAATTGAAGAGTTCAAGAACCACATTCATTGTGACAGGTGTGGTCAGGCATTCCAGCAGGTAGAATTAGAAAAACACATGAAAGTTTTTCATGAGCCACTTCACTGCCCTTGTGGAATAGTCCTCGAGAAAGAGCAAATGGTGGAGCATCAAGCTTCAGTTTGCCCTGTGCGTCTTATTACATGCCAGTTTTGTGGTGATATGGTTCAAGCTGGGAACTCTGCCATTGATGTCCGTGACAGATTAAGAGGTTTGTCAGAGCATGAGAGTATATGTGGTTCCAGGACTGCCCCCTGTGACTCTTGTGGGCGTGCGGTAATGTTGAAGGACATGGACATTCACCATATTGCTGTTCATCAAAATGGCTAA	3732	0.4258	MELKKGILLLLLLLEYVCCNVEAKCVKGCDVALASYYVSPGFLVLDNITRLMESSVLSNDVIISYNKDNIVNRTLLSLMRINIPFPCDCIRGEFLGHVFQYSAAAGDTYDSIAKVKYANLTTIELLRSFNSYGQNDIPANAMVNVTVNCSCGNSQVSKDYGLFITYPLRPGNSLHVIADKAHLDAQLLQSYNPGVNFSKESGIVFIPGRGLARGAVAGISIAGISGLLLLVICIYVKVFQKKEGEKPKLPTEKSLAFSTQDASGSTEYETSGSSGTATASATGLTGIMVAKSMEFTYQELAKATNNFSSENKIGQGGFGAVFYAELRGEKTAIKKMDVQASTEFLCELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIDNGNLAQYLHGTGKDPFPWSSRVQIALDSARGLEYIHEHTVPVYIHRDVKSANILIDKHLRGKVADFGLTKLFEVGGSTLHTRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKNAVLKTGESVAESKGLVALFEEALNQSNPSEGIRKLVDPRLGENYPIDSVLKIAQLARACTRDNPLLRPSMRSIVVALMTLSSPTEDFYDASYENQTLINLLKASSIVSKTKRRRRLWLSEEDQGDDEIIRSATELHDASIRFSKCRTKQETTHQTGNDVTSYVFTNTPHRREMDFELRRAREKLEKEQRERKERARLKVQKERKAKEEAQRQKEALEAVQRSRRIDAVEAQLKADQQMQETLLAGRGIVFYRLLEAVPYQGGGDKIKLPPSCFTELSDQGAFDKGPIYFQLSLVHKESSSSFQDTNKDNQGTTHSGVLEFTADEGQVGLPPHVRNNLFSEGASESPLVEVRYVWLPKGTYAKLQPERVGFSDLPNHKAILETSLRQHATLSQGDILTVNYGELAYKLRVLELKPSSSVSVLETDIEVDIVDPDTSSEKADEHVLIPLAFGMSQSGTVEEGKFVYYKFSIDNNVIWEKLSSGNSCIEVKLESETGGGDTDLFISKHPLIFPTRHQHEWSSHDIGAKSLILSSKDKSLGTGTYSIGIYGFKGLTKYKISAVVRDNFNQKVGQQASSSVSSVEMDTEQCTNCKHYIPTRTIALHEAYCRRHIVVCQHAGCGVVLRIEEFKNHIHCDRCGQAFQQVELEKHMKVFHEPLHCPCGIVLEKEQMVEHQASVCPVRLITCQFCGDMVQAGNSAIDVRDRLRGLSEHESICGSRTAPCDSCGRAVMLKDMDIHHIAVHQNG	1243

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst8g00624	1243	Gene3D	Phosphorylase Kinase; domain 1	287	377	-	-
	Spst8g00624	1243	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1151	1202	IPR013083	-
	Spst8g00624	1243	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	422	434	IPR008271	GO:0004672\|GO:0006468
	Spst8g00624	1243	FunFam	LysM receptor kinase 2	286	377	-	-
	Spst8g00624	1243	CDD	UDM1_RNF168_RNF169-like	676	737	-	-
	Spst8g00624	1243	Pfam	Ubiquitin fusion degradation protein UFD1	763	932	IPR004854	GO:0006511
	Spst8g00624	1243	Pfam	Protein tyrosine and serine/threonine kinase	310	576	IPR001245	GO:0004672\|GO:0006468
	Spst8g00624	1243	SMART	serkin_6	307	579	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst8g00624	1243	Gene3D	-	857	930	-	-
	Spst8g00624	1243	SUPERFAMILY	Protein kinase-like (PK-like)	288	577	IPR011009	-
	Spst8g00624	1243	ProSitePatterns	Protein kinases ATP-binding region signature.	313	335	IPR017441	GO:0005524
	Spst8g00624	1243	Gene3D	Transferase(Phosphotransferase) domain 1	378	600	-	-
	Spst8g00624	1243	Gene3D	-	750	856	IPR042299	-
	Spst8g00624	1243	ProSitePatterns	Zinc finger C2H2 type domain signature.	1220	1240	IPR013087	-
	Spst8g00624	1243	Coils	Coil	670	722	-	-
	Spst8g00624	1243	ProSiteProfiles	Protein kinase domain profile.	307	588	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Spst8g00624	1243	PANTHER	CHITIN ELICITOR RECEPTOR KINASE 1-RELATED	9	587	IPR044812	GO:0019199\|GO:0045087
	Spst8g00624	1243	FunFam	PTI1-like tyrosine-protein kinase 3	378	591	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst8g00624	Spst-Chr8	5846091	5855395	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst8g00624	1	601	Receptor kinase-like Gene Family	AT3G21630	53.451	0.0	640

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Spst8g00624		PK_Tyr_Ser-Thr	1.4e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst8g00624	-		-	gmx:100777384	984.556