Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00623 ATGGAACATAGATTCAGATTATCAGTTTTCTTCATGTTATGGGCCTCTATGGCGTTTAGTGCAGAATCCAAGTGTAGGAGGGATTGCGATTTAGCTCTAGCTTCCTACTATATAACAGGAGATAACTTGACATATATATCAATGCTTATGGAATCCCAGGTTCTTTCAAAACCTGAAGATATTCTCCCCTACAACAATGAAACCATAAAAAGCAAAGACCAGGTCCAAGCCTCTACCAGAGTGAACGTTCCATTCCCTTGTGATTGCATTGGAGAGTTTCTTGGCCATATATTCCAATATAGCGTTGTATCAGGCGACACTTACACGTCCATTGCCAATCAGAGTTATTCCAATTTGACCACTGCTCAGTTGTTGCAGAGCTTCAATTCATATTCACCAACTGATGTACCTGATACCGTGACTCTTGATGTCTTCATTAACTGTTCCTGTGGGAATAGTGAAGTTTCCAAGGATTATGGATTGTTCATCACTTACCCGCTTAGACCTGAGGATTCTTTGCAGTCAATTGCCAACAAGACTGGGATTGAGAGTGACTTGCTTCTTAAGTACAACCCAGGTGTAAATTTTAGCCAAGGGAGTGGTTTGGTTTATATTCCAGGGAAAGGTACAACTTCCTCCATAGACCAAAATGGTCGCTATGTGCCCCTTCATATAAGCACTGGAGGTATTACAATTGGGATTATCGCTGGAATATCTGTTGGAGTAGTAACAGCACTTCTTCTATTGGCATCTTGTGTGTATGTTACATATTACCGAAGAAAAAAGGTATGGAAGAAGAATTTGCTCTCAGAAGAATTCAGGATGAACTCGGCTAGAGTTAAGAGTGATCAAGCCTCTAGTGATCCTGATGCAAAAGGTGGTACCAACACCATTGGCATTAGGGTGGACAAATCAGCAGAGTTTTCATATGAAGAACTAGCCAATGCTACAAATAACTTCAGTTTGGCTAATAAAATTGGTCAAGGTGGTTTTGGGCAAGTCTATTTCGCAGAGCTGAATGGCGAGAAATCTGCAATAAAAAAGATGGACATGCAAGCATCAAGAGAATTTCTGGCTGAACTGAATGTGTTGACACGTGTTCATCACTTGAACCTGGTGCGCTTGATTGGATATTGTATTAAGGGCTCCCTTTTCCTAGTTTATGAATACATTGATAATGGCAACTTAGGACAACATCTACGTAAATCAGGTTTCGATCCTTTGCCATGGTCTGCCCGAGTTCAAATTGCTCTGGATTCAGCCAGAGGTCTTCAGTACATTCATGAGCATACTGTGCCTGTTGCTGACTTTGGATTAACCAAGTTGATTGACGTTGGAAGTTCATCACTTCCGACTGGTAATATGAAGGGCACATTTGGTTACATGCCACCAGAATATGCATATGGCAATGTTTCTCCCAAAATAGATGTCTATGCTTTTGGAGTTGTTCTTTATGAACTAATTTCTGCTAAAGAAGCATTGATCAGGGGTGGTGTACATGGTGCTGAATTAAAGGGCCTTGTATCATTGTTTGATGAAGCTTTTGAAGAGCAAGATCCCACAGAAGGTCTAAAAAAACTGGTGGATCCTAGGCTAGGAGATAACTACCCAATGGATTCAGTTTGCAAGATGGCACAACTTGCCAAAGCATGCACACAGAGCGATCCACAACTACGTCCAAATATGAGTTCTGTTGTGGTCACTCTCACAGCACTCACTTCAACTACTGAGGATTGGGATATTGCTTCCATCATTGAAAATCCAACTCTAGCAAATCTGATGTCTGGGAAATAA 1794 0.4114 MEHRFRLSVFFMLWASMAFSAESKCRRDCDLALASYYITGDNLTYISMLMESQVLSKPEDILPYNNETIKSKDQVQASTRVNVPFPCDCIGEFLGHIFQYSVVSGDTYTSIANQSYSNLTTAQLLQSFNSYSPTDVPDTVTLDVFINCSCGNSEVSKDYGLFITYPLRPEDSLQSIANKTGIESDLLLKYNPGVNFSQGSGLVYIPGKGTTSSIDQNGRYVPLHISTGGITIGIIAGISVGVVTALLLLASCVYVTYYRRKKVWKKNLLSEEFRMNSARVKSDQASSDPDAKGGTNTIGIRVDKSAEFSYEELANATNNFSLANKIGQGGFGQVYFAELNGEKSAIKKMDMQASREFLAELNVLTRVHHLNLVRLIGYCIKGSLFLVYEYIDNGNLGQHLRKSGFDPLPWSARVQIALDSARGLQYIHEHTVPVADFGLTKLIDVGSSSLPTGNMKGTFGYMPPEYAYGNVSPKIDVYAFGVVLYELISAKEALIRGGVHGAELKGLVSLFDEAFEEQDPTEGLKKLVDPRLGDNYPMDSVCKMAQLAKACTQSDPQLRPNMSSVVVTLTALTSTTEDWDIASIIENPTLANLMSGK 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00623 597 Pfam LysM domain 168 196 IPR018392 -
Spst8g00623 597 Pfam LysM domain 100 135 IPR018392 -
Spst8g00623 597 ProSitePatterns Protein kinases ATP-binding region signature. 326 348 IPR017441 GO:0005524
Spst8g00623 597 Gene3D Transferase(Phosphotransferase) domain 1 391 587 - -
Spst8g00623 597 ProSiteProfiles Protein kinase domain profile. 320 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00623 597 ProSiteProfiles LysM domain profile. 98 144 IPR018392 -
Spst8g00623 597 SUPERFAMILY Protein kinase-like (PK-like) 301 569 IPR011009 -
Spst8g00623 597 Gene3D Phosphorylase Kinase; domain 1 293 390 - -
Spst8g00623 597 Pfam Protein kinase domain 322 566 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00623 597 FunFam LysM receptor kinase 2 299 390 - -
Spst8g00623 597 ProSiteProfiles LysM domain profile. 163 211 IPR018392 -
Spst8g00623 597 FunFam PTI1-like tyrosine-protein kinase 3 432 583 - -
Spst8g00623 597 CDD LysM 163 195 IPR018392 -
Spst8g00623 597 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 7 582 IPR044812 GO:0019199|GO:0045087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00623 Spst-Chr8 5839554 5844463 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00623 1 597 Receptor kinase-like Gene Family AT3G21630 53.628 0.0 641
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Spst8g00623 Pkinase 9.7e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00623 - K13429 gmx:100803042 961.829