Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst8g00603 ATGATGTGCACAAAGCTTGTATCATTTCGGTTGATTCTCATCTCGTTTTTCTTTTCAGTTCCAAGGCTTTCTTCCTTGGAAGTTTCTGGTGTTTCTTTAGCCAATGCTACTGTTGTGGTTGGCCATGAAGCTGCAGAGGATGAAGAGGTGGAAGCAAGTGCTCTATTGAAATGGAAAGCCAGCCTTGATAACCAAAGCCAGGCTCTCTTGTCTTCTTGGTCCACCCTTACTAGCCCTTGCAAGTGGAAGGGAATAGTTTGTGATGAATCCAATTCTGTCAGAACTGTAGATGTTACAAACTTTGGACTGAAAGGTACACTTCTCAATCTCAACTTGTCATCCTTTCCTAAGCTGATGAGGTTGTATATAAGTTACAACGACCTCAGTGGACCTATTCCCCACCAAATTGGTCACATGTCCAGAATTTCTCACTTGGAAATGGACCATAATCTCTTTAGTGATTCCATCCCCCAAGAGATAGGGGCTCTGCATAACTTGGAGCATCTCTCCTTGAGAGCAAATCAACTTTCTGGTTCCATCCCACAAACAATTGGAATGTTGACAAATCTTGTTATACTTGATTTGTCAACCAACCATCTCTCTGGTGCAATCCCTTCAGTTAGCAACCTGACAAATTTAGAACAACTTATACTCTACAACAACGTTCTATCTGGCCCTATTCCTGAGGAGTTGGGAGGACTTCATTTTCTCAGAATCATCAAATTGATACAAAATCATCTTTCCGGGACAATCCCATCTTCCATAGGATACCTGGCTAATTTGAGAAGGCTTCAGCTCACTCGTAATAAACTAAATGGATCAATTCCTTCCTCTCTTGGAAACTTGACAAAACTCAGTGAATTGTCCATGGGTGAGAACAAGCTTTCCGGATTAATTCCAGCTTCCATAGGAAACTTGGTCAATCTGCAAAAGCTTAACCTTGCAGTAAACAGTCTTTCTGGATCTATTCCCTATACCTTCAGAAATTTGACAAAGCTCACCTTCCTGTTACTTTATATGAACAAACTTACAGGAAGTTTTTCAACAGCAACAAGTAACCTTACCAATCTAGTAAGTTTACAAATAAGCTCAAATCACTTCACTGGCTCTTTGCCACAACATATTTGCCTTGGAGGTTCACTTTTATATTTTGCTGCCGATATGAATAATTTCACAGGTCCAATTCCAACAAGTTTGAAGAACTGCTCTAGCCTTGTGAGGCTCAACGTTGCAGGAAATATGTTGACTGGAAATATTTCAAATGATTTTGGTGTATATCCAAATTTGGAGTACATTGATCTGAGTAGAAATGGCTTTAATAGCCACATTCCATCAAATTGGGCCAAATTCCACAATCTCATAGGTCTAATGATCTCATACAACAATTTATTCGGTGGTATACCCCCAGAGCTAGGCCAGGCACCTAAGTTACAAAAGCTTGGACTGTCTTCAAATCATCTAACAGGAAAAATTCCGAAAGAACTTGGAAACTTGACCTACTTGTCTGAACTCTACTTAAGTAACAACAATCTCTCAGGCAACATTCCCATAGAAATAGGATCCTTAAAGCAACTTTGGAAATTCGATTTTGCAACAAATAATTTAAGTGGGCCAATCCCAGAACAGCTCGGACAGTTGCGCAAATTATTTCACTTGAACTTAAGCCATAACAAATTCATGGAAAGCATCCCCTCTGAATTTAGCCAATTGAAGTATCTTCAAACTCTTGATCTTAGTTTTAATTCTTTAAATGGAAAAATTCCAGTAGCACTTGGAAAATTGAAGATGTTGGAAAACTTGAATCTCTCCCACAACAATCTCTCTGGAAACATTCCTTCTAGTTTAAAGGATATTCTGAGTTTGACAGAAGTTGACATATCTAACAACCAATTAGAGGGTGAAATTCCTAACAGTGCAGCCTTCCTTAAAGCTCCACTTGAAGCATTGGCAGAAAACAAAAACTTGTGTGGCAATGCTTCCGGGTTGATGGCTTGCCCACAGTTTACAAGTCACAATCATCATGATAAAAAGGTCATGATGTGGGCTTTGGGTGCACTATTACCAGCAGTGTTTGTGTTTGGAGTTTCACTATACGTTCATTGGCAAAGAGCAAGAAAAGCCGAAAAGCAAGACATAAAAGAACAAACTCGAGATCTTTTTTCTATATGGAGTTATGATGGAAAAATGGTGTATGAAAATATCATCGAAGCAACCAATGATTTTGATGACAAAAATCTCATTGGAGAAGGAGCGTTTGGAGGTGTTTACAAGGCTATCTTACCCTCTGGTCAGATTGTTGCTGTGAAAAAACTTGACGCGGGAGTTGACAGGGAAATGCTTGAATTTAAGGCTTTTACAACTGAAATTCGAGCCTTGACAGAAATAAAACATCGTCACATTGTGAAGTTGCATGGGTTTTGTGAACATCCACGCCACTGTTTCTTGGTTTATGAGTTCCTAGAAGGTGGCAGCTTGGATAAAGTACTAAACAACGACACACATGCAGCAATGTTTGATTGGAATAAAAGGGCTAACGTTGTTAAAGGTGTGGCAAATGCTTTGTATCATATGCATCATGGTTGCTCTCCGCCTATTGTTCATCGTGACATATCAAGCAAGAATGTTCTTATAGATTTGGAATATGAAGCTCGCATATCTGACTTTGGAACAGCAAAGATTCTAAATCCTAATTCACGCAATTTAACTCAGTTTGCAGGCACTTATGGATATGCTGCACCAGAGCTTGCTTATACAATGGAAGTGAATGAGAAATGTGATGTGTTCAGTTTTGGGGTGCTTTGTTTGGAAATAATAATGGGAAATCATCCACGAGATCTCATTTCTTCAATGCTTTCACCCTCTTCAACACCATTGACATCTAATTTGCTATTGAAGGATGTCATGGACCAACGACTTCCTCTTCCAGTGATGCCAGTTGTTAAGGAGGTAGTCTTCATTGCAGAAGTGGCATTTGCTTGTTTGAATAATAGACCACTTTCTCGTCCAACCATGGAAGATGTGTATAACAAGTTTGTGATGCCTAAGTCACCTTTAATGAGGGGGACACTCAACACCATTGCACTTGGACAACTTCGAAATTATTGA 3105 0.3945 MMCTKLVSFRLILISFFFSVPRLSSLEVSGVSLANATVVVGHEAAEDEEVEASALLKWKASLDNQSQALLSSWSTLTSPCKWKGIVCDESNSVRTVDVTNFGLKGTLLNLNLSSFPKLMRLYISYNDLSGPIPHQIGHMSRISHLEMDHNLFSDSIPQEIGALHNLEHLSLRANQLSGSIPQTIGMLTNLVILDLSTNHLSGAIPSVSNLTNLEQLILYNNVLSGPIPEELGGLHFLRIIKLIQNHLSGTIPSSIGYLANLRRLQLTRNKLNGSIPSSLGNLTKLSELSMGENKLSGLIPASIGNLVNLQKLNLAVNSLSGSIPYTFRNLTKLTFLLLYMNKLTGSFSTATSNLTNLVSLQISSNHFTGSLPQHICLGGSLLYFAADMNNFTGPIPTSLKNCSSLVRLNVAGNMLTGNISNDFGVYPNLEYIDLSRNGFNSHIPSNWAKFHNLIGLMISYNNLFGGIPPELGQAPKLQKLGLSSNHLTGKIPKELGNLTYLSELYLSNNNLSGNIPIEIGSLKQLWKFDFATNNLSGPIPEQLGQLRKLFHLNLSHNKFMESIPSEFSQLKYLQTLDLSFNSLNGKIPVALGKLKMLENLNLSHNNLSGNIPSSLKDILSLTEVDISNNQLEGEIPNSAAFLKAPLEALAENKNLCGNASGLMACPQFTSHNHHDKKVMMWALGALLPAVFVFGVSLYVHWQRARKAEKQDIKEQTRDLFSIWSYDGKMVYENIIEATNDFDDKNLIGEGAFGGVYKAILPSGQIVAVKKLDAGVDREMLEFKAFTTEIRALTEIKHRHIVKLHGFCEHPRHCFLVYEFLEGGSLDKVLNNDTHAAMFDWNKRANVVKGVANALYHMHHGCSPPIVHRDISSKNVLIDLEYEARISDFGTAKILNPNSRNLTQFAGTYGYAAPELAYTMEVNEKCDVFSFGVLCLEIIMGNHPRDLISSMLSPSSTPLTSNLLLKDVMDQRLPLPVMPVVKEVVFIAEVAFACLNNRPLSRPTMEDVYNKFVMPKSPLMRGTLNTIALGQLRNY 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst8g00603 1034 Gene3D Ribonuclease Inhibitor 48 206 IPR032675 -
Spst8g00603 1034 Pfam Leucine rich repeat N-terminal domain 51 88 IPR013210 -
Spst8g00603 1034 ProSiteProfiles Protein kinase domain profile. 741 1019 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00603 1034 FunFam Leucine-rich receptor-like protein kinase family protein 251 349 - -
Spst8g00603 1034 ProSitePatterns Protein kinases ATP-binding region signature. 747 770 IPR017441 GO:0005524
Spst8g00603 1034 SUPERFAMILY L domain-like 68 375 - -
Spst8g00603 1034 Gene3D Phosphorylase Kinase; domain 1 701 819 - -
Spst8g00603 1034 Gene3D Transferase(Phosphotransferase) domain 1 820 1016 - -
Spst8g00603 1034 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 329 1012 - -
Spst8g00603 1034 SMART LRR_sd22_2 163 178 - -
Spst8g00603 1034 SMART LRR_sd22_2 570 602 - -
Spst8g00603 1034 SMART LRR_sd22_2 330 356 - -
Spst8g00603 1034 SMART LRR_sd22_2 187 212 - -
Spst8g00603 1034 SMART LRR_sd22_2 282 308 - -
Spst8g00603 1034 ProSiteProfiles Leucine-rich repeat profile. 189 211 IPR001611 GO:0005515
Spst8g00603 1034 Gene3D Ribonuclease Inhibitor 341 666 IPR032675 -
Spst8g00603 1034 ProSitePatterns Tyrosine protein kinases specific active-site signature. 865 877 IPR008266 GO:0004672|GO:0006468
Spst8g00603 1034 FunFam MDIS1-interacting receptor like kinase 2 820 1017 - -
Spst8g00603 1034 FunFam Nuclear pore complex protein NUP107 48 206 - -
Spst8g00603 1034 Pfam Protein kinase domain 742 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst8g00603 1034 SUPERFAMILY L domain-like 405 657 - -
Spst8g00603 1034 FunFam Leucine-rich repeat protein kinase family protein 705 819 - -
Spst8g00603 1034 Gene3D Ribonuclease Inhibitor 259 329 IPR032675 -
Spst8g00603 1034 Gene3D Ribonuclease Inhibitor 207 258 IPR032675 -
Spst8g00603 1034 SUPERFAMILY Protein kinase-like (PK-like) 722 1010 IPR011009 -
Spst8g00603 1034 Pfam Leucine Rich Repeat 620 641 IPR001611 GO:0005515
Spst8g00603 1034 Pfam Leucine rich repeat 260 319 IPR001611 GO:0005515
Spst8g00603 1034 Pfam Leucine rich repeat 567 607 IPR001611 GO:0005515
Spst8g00603 1034 SMART LRR_typ_2 306 329 IPR003591 -
Spst8g00603 1034 SMART LRR_typ_2 258 281 IPR003591 -
Spst8g00603 1034 SMART LRR_typ_2 210 234 IPR003591 -
Spst8g00603 1034 SMART LRR_typ_2 282 305 IPR003591 -
Spst8g00603 1034 SMART LRR_typ_2 594 617 IPR003591 -
Spst8g00603 1034 SMART LRR_typ_2 498 522 IPR003591 -
Spst8g00603 1034 SMART LRR_typ_2 354 378 IPR003591 -
Spst8g00603 1034 SMART LRR_typ_2 163 187 IPR003591 -
Spst8g00603 1034 SMART LRR_typ_2 546 570 IPR003591 -
Spst8g00603 1034 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 354 669 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst8g00603 Spst-Chr8 5706262 5709475 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst8g00603 51 913 Receptor kinase-like Gene Family AT4G08850 44.124 0.0 707
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst8g00603 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst8g00603 - - gmx:100800924 1497.26